Browse Element(s) Details


Os.17699.2.S1_x_at

Description gb:NM_189538.1
DB_XREF= gi:34906159
GEN=P0406H10.15
TID=Os.17699.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406H10.15 (P0406H10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0406H10.15 (P0406H10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0843011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17699.2.S1_x_at--959--3871Chr01:4145866..4145890 (25 bp)
CTGTTTGAGACCTCGAGGACTCCAA
LOC_Os01g08430
Os.17699.2.S1_x_at--38--5811Chr01:4145910..4145934 (25 bp)
GACCGAAGCAGCGTTCCCATAAAAA
LOC_Os01g08430
Os.17699.2.S1_x_at--184--9911Chr01:4146162..4146186 (25 bp)
TACTCTCCCAGGTTCTCTGTGAAAA
LOC_Os01g08430
Os.17699.2.S1_x_at--887--3031Chr01:4146190..4146214 (25 bp)
AATCCCCTCGCGCATTTGATGGTTT
LOC_Os01g08430
Os.17699.2.S1_x_at--528--5171Chr01:4146267..4146291 (25 bp)
GCAAGCTTTGCATTCTCTGAGGATC
LOC_Os01g08430
Os.17699.2.S1_x_at--713--3631Chr01:4146304..4146328 (25 bp)
CTTCCTTCCGTCATCAGAGAGTGAA
LOC_Os01g08430
Os.17699.2.S1_x_at--144--2611Chr01:4146351..4146375 (25 bp)
AACGCGGTCATCCACGAATGGCAGA
LOC_Os01g08430
Os.17699.2.S1_x_at--1060--4191Chr01:4146412..4146436 (25 bp)
CCCGCGTCGACATAGAGGAGCTCAA
LOC_Os01g08430
Os.17699.2.S1_x_at--521--2711Chr01:4146435..4146459 (25 bp)
AAGCAGCGAGATGCCTCCAGTGCAG
LOC_Os01g08430
Os.17699.2.S1_x_at--211--6011Chr01:4146493..4146517 (25 bp)
GAGAGAAGGCCCACCTGCTGATGCA
LOC_Os01g08430
Os.17699.2.S1_x_at--822--2951Chr01:4146540..4146564 (25 bp)
AAGGCCACAGTTGCTCTCATGATGG
LOC_Os01g08430
Target Sequence 
CTGTTTGAGACCTCGAGGACTCCAACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCT
CAGGAAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGTACTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCT
CGCGCATTTGATGGTTTGGAAAGATGTTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGC
ATTCTCTGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGATCACTGGAACGCGG
TCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTCCCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAG
CAGCGAGATGCCTCCAGTGCAGCGCAGCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCA
CAAGGCTGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17699.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis