Browse Element(s) Details


Os.17805.1.S2_at

Description gb:AK119283.1
DB_XREF= gi:37988906
TID=Os.17805.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0683F02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C08, full insert sequence.
FL= gb:AK061128.1 gb:AK100746.1 gb:AK108646.1 gb:AK119283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6393011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63940Os.55646.1.S1_at11/111+37445313..37447791Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g63950Os.27631.1.S1_at11/111+37449981..37453698expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17805.1.S2_at--988--4631Chr01:37423693..37423717 (25 bp)
GCGTTGCACGCATATGTTCGAGTAC
LOC_Os01g63930
Os.17805.1.S2_at--387--8071Chr01:37423619..37423643 (25 bp)
GGAGAAGAACCAACGCGGCGCACAT
LOC_Os01g63930
Os.17805.1.S2_at--1021--7331Chr01:37423456..37423480 (25 bp)
GTGCACGTTTTCTTTTGCATCCAGA
LOC_Os01g63930
Os.17805.1.S2_at--978--7611Chr01:37423391..37423415 (25 bp)
GGGACTCTCTCCCTTTACTTATTAT
LOC_Os01g63930
Os.17805.1.S2_at--788--3151Chr01:37423335..37423359 (25 bp)
AATTCCATGGCGCTTCCGAAGAAGG
LOC_Os01g63930
Os.17805.1.S2_at--859--2931Chr01:37423314..37423338 (25 bp)
AAGGCAGACCTGAGATTTCCACATG
LOC_Os01g63930
Os.17805.1.S2_at--57--9791Chr01:37423262..37423286 (25 bp)
TAAGACTCCAACTCCACGCTTGATT
LOC_Os01g63930
Os.17805.1.S2_at--88--4931Chr01:37423245..37423269 (25 bp)
GCTTGATTCCGTTCATCGGCTGTAT
LOC_Os01g63930
Os.17805.1.S2_at--766--8751Chr01:37423225..37423249 (25 bp)
TGTATGGTCAGCTCGACTGTCGATC
LOC_Os01g63930
Os.17805.1.S2_at--463--9391Chr01:37423206..37423230 (25 bp)
TCGATCGATCCCGTCAAAATTGTTA
LOC_Os01g63930
Os.17805.1.S2_at--820--9971Chr01:37423183..37423207 (25 bp)
TACCTCCCTCTCAAGTTACATATAA
LOC_Os01g63930
Target Sequence 
GCGTTGCACGCATATGTTCGAGTACGGCGACATAAACAGATGCTAATTCTTGGTGGTCGGGGTGGGTCTCGGGGGGAGAA
GAACCAACGCGGCGCACATGTGCTCGTGGGGCGGCCGCTGGCTGCTCGTGTTAGATCCTCCTCGTGGTCCTGCCGTCCGT
CCCANCTTCGTCTGGGCCTCTCGCCAACCAAGTGCCATTAAACTAGTACGCAGTACCAGCAGCTGCAAGAAGCCCGGGTG
CACGTTTTCTTTTGCATCCAGAGCAGCCAAGGACGCAATGGCAGTAAAAGATAGGTAAGGTGGGGACTCTCTCCCTTTAC
TTATTATCCTTCNTGATCTACAGGAACTAAGCTAGGCAAATTCCATGGCGCTTCCGAAGAAGGCAGACCTGAGATTTCCA
CATGCCAAAAGGTTAGGATGCCAAGTGCCAATAAGACTCCAACTCCACGCTTGATTCCGTTCATCGGCTGTATGGTCAGC
TCGACTGTCGATCGATCCCGTCAAAATTGTTACCTCCCTCTCAAGTTACATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17805.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis