Browse Element(s) Details


Os.17905.1.S1_at

Description gb:AK067306.1
DB_XREF= gi:32977324
TID=Os.17905.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full insert sequence.
FL= gb:AK101840.1 gb:AK067306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4284011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17905.1.S1_at--646--7051Chr04:25132008..25132032 (25 bp)
GTAACCAAAGCCCTGATGTTCGAAA
LOC_Os04g42840
Os.17905.1.S1_at--76--5291Chr04:25131150..25131174 (25 bp)
GAAGGCATTCGTCCCGTATTTGGAA
LOC_Os04g42840
Os.17905.1.S1_at--573--4551Chr04:25131105..25131129 (25 bp)
GCGCCTTGTAACTATCTACGCAAAC
LOC_Os04g42840
Os.17905.1.S1_at--237--191Chr04:25131077..25131101 (25 bp)
ATTTCACAAGCAAGGTCTGGCGCTC
LOC_Os04g42840
Os.17905.1.S1_at--436--8891Chr04:25131030..25131054 (25 bp)
TGAGGTGCAACACAACGCCCTGTTA
LOC_Os04g42840
Os.17905.1.S1_at--510--4151Chr04:25131015..25131039 (25 bp)
CGCCCTGTTATTATTTGTGTTCTGT
LOC_Os04g42840
Os.17905.1.S1_at--343--2471Chr04:25130926..25130950 (25 bp)
AACAAAGCCCCTTGTGTATCGAGCT
LOC_Os04g42840
Os.17905.1.S1_at--478--8771Chr04:25130814..25130838 (25 bp)
TGTTTTCCTTTTGTACCACTTAGTG
LOC_Os04g42840
Os.17905.1.S1_at--657--831Chr04:25130753..25130777 (25 bp)
ATGGAGAGACCTAGTGTCTGCCCCA
LOC_Os04g42840
Os.17905.1.S1_at--622--9491Chr04:25130737..25130761 (25 bp)
TCTGCCCCATTTTCATTTGCTGTAT
LOC_Os04g42840
Os.17905.1.S1_at--555--9591Chr04:25130664..25130688 (25 bp)
TCTTGGTTTTGCCTTGCTTATGGAG
LOC_Os04g42840
Target Sequence 
GTAACCAAAGCCCTGATGTTCGAAAGACTGTTGTATTCTGCTTGGTGGATATCTACATCATGCTTGGGAAGGCATTCGTC
CCGTATTTGGAAGGGCTTAACAGCACGCAGCTGCGCCTTGTAACTATCTACGCAAACCGGATTTCACAAGCAAGGTCTGG
CGCTCCGATTGATGCTAACCAATGACCTGAGGTGCAACACAACGCCCTGTTATTATTTGTGTTCTGTATGAATACCTGTT
TGGCAGGGGTGCATTTTTGGGTTTCATTTGTTTGTGCATGTGTATAGTATAAACAAAGCCCCTTGTGTATCGAGCTCCTG
CCCTTCTTTTTCTCTTTGTGTGATTATGTATTCCTTTTTTTTTTNNCAACCTCTTCTTTTTGTCAGCATGGTGAGTGTTA
ATGAGTGTTTTCCTTTTGTACCACTTAGTGCTTACACTGTACAAAGAAAAAGGATAGTGTAGGTTCATGGAGAGACCTAG
TGTCTGCCCCATTTTCATTTGCTGTATGATTTCCGTTGGAATTGCTAGGTGTGAATTCTCAGTTGTCAGCCTCGTTCTTG
GTTTTGCCTTGCTTATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis