Browse Element(s) Details

Os.17942.1.S1_at

Description

gb:AK065329.1
DB_XREF= gi:32975347
TID=Os.17942.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I02, full insert sequence.
FL= gb:AK065329.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45110	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45040	OsAffx.15932.1.S1_at	10/11	6	+	27252386..27254042	B-box zinc finger family protein
LOC_Os06g45050	Os.54880.1.S1_at	11/11	6	+	27256070..27260258	Clathrin assembly protein, putative, expressed
LOC_Os06g45060	Os.53705.1.S1_at	11/11	6	+	27260314..27261597	expressed protein
LOC_Os06g45070	OsAffx.28110.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_x_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45080	Os.25345.2.S1_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080	Os.25345.1.S1_x_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090	Os.46304.1.S1_a_at	11/11	6	+	27270985..27274167	expressed protein
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed
LOC_Os06g45150	OsAffx.15933.1.S1_s_at	11/11	6	+	27302502..27303231	Pollen allergen family protein, expressed
LOC_Os06g45160	Os.22589.1.S1_at	11/11	6	+	27305729..27306412	Pollen allergen family protein, expressed
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17942.1.S1_at--320--627	1	Chr06:27279841..27279865 (25 bp)	GATGTCACCTACGATCTCTTAAAGA	LOC_Os06g45110
Os.17942.1.S1_at--617--819	1	Chr06:27279385..27279409 (25 bp)	GGAAGTTCTACCCTGAAACTCTTGA	LOC_Os06g45110
Os.17942.1.S1_at--171--725	1	Chr06:27279303..27279327 (25 bp)	GTCCTTGGCATATGGTCTCAAAATC	LOC_Os06g45110
Os.17942.1.S1_at--317--571	1	Chr06:27279230..27279254 (25 bp)	GACTCTTACACATGGATCTGGACCT	LOC_Os06g45110
Os.17942.1.S1_at--39--141	1	Chr06:27279195..27279219 (25 bp)	AGACTACACACGCAGATCGTCATCG	LOC_Os06g45110
Os.17942.1.S1_at--489--961	1	Chr06:27279176..27279200 (25 bp)	TCATCGCAGCAACTGTGACGGCTTG	LOC_Os06g45110
Os.17942.1.S1_at--501--193	1	Chr06:27279159..27279183 (25 bp)	ACGGCTTGGAGTTCTTAGTCACTGG	LOC_Os06g45110
Os.17942.1.S1_at--452--563	1	Chr06:27279106..27279130 (25 bp)	GACACTGCCCTCACTGTAATTTATT	LOC_Os06g45110
Os.17942.1.S1_at--561--731	1	Chr06:27279081..27279105 (25 bp)	GTGCTCTCTGTAATTTTTCCATTGA	LOC_Os06g45110
Os.17942.1.S1_at--305--625	1	Chr06:27279058..27279082 (25 bp)	GATGGTTCTTAGTCCATTGACTCCA	LOC_Os06g45110
Os.17942.1.S1_at--471--5	1	Chr06:27279043..27279067 (25 bp)	ATTGACTCCATTCCTGTTGAAGAAC	LOC_Os06g45110

Target Sequence

GATGTCACCTACGATCTCTTAAAGAATATAACAGCTGTTGATGAAAATTTCCATGTAACAAGTGATGACAAAAAACTTAT
GACACAGAAGCCATGCTTATGGAATGGATCGAAGAGACCATGCTATCTTTTTGCTAGGAAGTTCTACCCTGAAACTCTTG
ACAACCTACTGAAGCTATTCACCAGCTATACATCTGTTTGAGCTCCATCAAATTCTTTGTCCTTGGCATATGGTCTCAAA
ATCCCATGGGCTTTTTTTTGCTGTTNTCTGTAAATTGCAAAATCAATACCTAGACTCTTACACATGGATCTGGACCTAGA
GACTACAAGACTACACACGCAGATCGTCATCGCAGCAACTGTGACGGCTTGGAGTTCTTAGTCACTGGGAAGGGCTGTGG
CGAAATTTGTAGCAATGACACTGCCCTCACTGTAATTTATTGTGCTCTCTGTAATTTTTCCATTGATGGTTCTTAGTCCA
TTGACTCCATTCCTGTTGAAGAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis