Browse Element(s) Details


Os.17968.1.S1_at

Description gb:AK122027.1
DB_XREF= gi:37991650
TID=Os.17968.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112C12, full insert sequence.
FL= gb:AK122027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5020011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17968.1.S1_at--193--5491Chr05:28684463..28684487 (25 bp)
GAACTTCACCCGGTACATCTGAAAG
LOC_Os05g50200
Os.17968.1.S1_at--438--1891Chr05:28684428..28684452 (25 bp)
ACGTAGGTCTGTTTCAACTTTGCAA
LOC_Os05g50200
Os.17968.1.S1_at--506--6511Chr05:28684341..28684365 (25 bp)
GATATCTCACCTTGGAAGTGTAGCC
LOC_Os05g50200
Os.17968.1.S1_at--215--2851Chr05:28684326..28684350 (25 bp)
AAGTGTAGCCATCAACTCCGTAGAT
LOC_Os05g50200
Os.17968.1.S1_at--576--271Chr05:28684237..28684261 (25 bp)
ATATGGTTCGGTCTACTCTTCTGCA
LOC_Os05g50200
Os.17968.1.S1_at--278--9571Chr05:28684221..28684245 (25 bp)
TCTTCTGCACTTCACAAACACGGAC
LOC_Os05g50200
Os.17968.1.S1_at--816--8091Chr05:28684200..28684224 (25 bp)
GGACCAGAACTATCCAAGTCTATTT
LOC_Os05g50200
Os.17968.1.S1_at--478--2851Chr05:28683946..28683970 (25 bp)
AAGTCCTTTGTGAGTTGGTGACCAT
LOC_Os05g50200
Os.17968.1.S1_at--558--291Chr05:28683915..28683939 (25 bp)
ATAGCATGGCACCTAGGAAGCCTAT
LOC_Os05g50200
Os.17968.1.S1_at--564--2651Chr05:28683898..28683922 (25 bp)
AAGCCTATAGTACCTCCATCCGGAA
LOC_Os05g50200
Os.17968.1.S1_at--468--2651Chr05:28683802..28683826 (25 bp)
AACCAATCACGTGTCACATCTTTGA
LOC_Os05g50200
Target Sequence 
GAACTTCACCCGGTACATCTGAAAGGCATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGAT
GTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAG
ATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCT
ACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTN
GNNNNNGGCAAAAGAGAAGTCCTTTGTGAGTTGGTGACCATAGATCCATAGCATGGCACCTAGGAAGCCTATAGTACCTC
CATCCGGAACAAGGTAATTTAAATAAAATAGATTTATCAATGCACAAACAGTTTAATTGCTGAGCGTGTACAAAATCACA
AACCAATCACGTGTCACATCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis