Browse Element(s) Details


Os.18085.1.S1_at

Description gb:AK105289.1
DB_XREF= gi:32990498
TID=Os.18085.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F02, full insert sequence.
FL= gb:AK105289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4490011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44850Os.50280.1.S1_at10/114+26333891..26335808glycosyl transferase family 8 protein, putative, expressed
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18085.1.S1_at--1009--4591Chr04:26354117..26354141 (25 bp)
GCGATCACGGACACGGTGGACCCGC
LOC_Os04g44900
Os.18085.1.S1_at--402--10811Chr04:26353990..26354014 (25 bp)
TTGTGCAGTACCTGGAAGGCGACGT
LOC_Os04g44900
Os.18085.1.S1_at--786--8711Chr04:26353951..26353975 (25 bp)
TGTCGCCGACGTACCAGAGCTTCAA
LOC_Os04g44900
Os.18085.1.S1_at--843--2491Chr04:26353928..26353952 (25 bp)
AACATGCTGGCGCTCATGCAGGACC
LOC_Os04g44900
Os.18085.1.S1_at--796--9931Chr04:26353889..26353913 (25 bp)
TACGTCATGTCCTACCCGATGACAT
LOC_Os04g44900
Os.18085.1.S1_at--878--6151Chr04:26353831..26353855 (25 bp)
GAGGTAGATGATGACCCGTTCCCAT
LOC_Os04g44900
Os.18085.1.S1_at--1020--4231Chr04:26353816..26353840 (25 bp)
CCGTTCCCATCAGCCGGATGTAGTT
LOC_Os04g44900
Os.18085.1.S1_at--864--4471Chr04:26353804..26353828 (25 bp)
GCCGGATGTAGTTAATCAGTACCTA
LOC_Os04g44900
Os.18085.1.S1_at--366--1191Chr04:26353787..26353811 (25 bp)
AGTACCTAACTAGTATCATCCTGTT
LOC_Os04g44900
Os.18085.1.S1_at--472--10151Chr04:26353774..26353798 (25 bp)
TATCATCCTGTTTTGTTTAAGATCA
LOC_Os04g44900
Os.18085.1.S1_at--879--9931Chr04:26353704..26353728 (25 bp)
TACGAGAATAGCTCAGTGTTCAGAT
LOC_Os04g44900
Target Sequence 
GCGATCACGGACACGGTGGACCCGCGCCTGCACGGCGACTTCGTCGAGAGCGAGGCGAGCCTCGTGCTGCGGCTGGGCCT
GCTGTGCTCGCACCCGCTGCCCGGCGCACGGCCGGGGACGAGGCAGCTTGTGCAGTACCTGGAAGGCGACGTGCCGCTGC
CGGAGCTGTCGCCGACGTACCAGAGCTTCAACATGCTGGCGCTCATGCAGGACCAGGGGTTCGACCCCTACGTCATGTCC
TACCCGATGACATCCACCAGCGCAGGCACCTTCTCTGACCTCTCTGGAGGTAGATGATGACCCGTTCCCATCAGCCGGAT
GTAGTTAATCAGTACCTAACTAGTATCATCCTGTTTTGTTTAAGATCAGAACTTTGGTGTTGTTATGTTTATATCTATGA
TGTAAAGTGGTGTTACGAGAATAGCTCAGTGTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis