Browse Element(s) Details


Os.18127.1.A1_at

Description gb:AK102071.1
DB_XREF= gi:32987280
TID=Os.18127.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082G11, full insert sequence.
FL= gb:AK102071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0287010/11Arginine/serine-rich splicing factor RSP41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18127.1.A1_at--968--5391NONE
GAAGCTACTCATTCTACCAAGTTGT
NONE
Os.18127.1.A1_at--256--7751Chr04:1108606..1108630 (25 bp)
GGTGATTTCTGTTGAGTATGCCTTC
LOC_Os04g02870
Os.18127.1.A1_at--343--511Chr04:1108508..1108532 (25 bp)
ATCGTCGATCAGTTAGTCCAGTGTA
LOC_Os04g02870
Os.18127.1.A1_at--469--3191Chr04:1108472..1108496 (25 bp)
CAAGTCCTGACTACGGTCGTCAAAG
LOC_Os04g02870
Os.18127.1.A1_at--584--2871Chr04:1108450..1108474 (25 bp)
AAGGAGTCCTGTGTACGGTTCGTAT
LOC_Os04g02870
Os.18127.1.A1_at--1052--9051Chr04:1107917..1107941 (25 bp)
TGCATCTGCCTCTCTAGATCTTTAG
LOC_Os04g02870
Os.18127.1.A1_at--1094--1472Chr04:1107885..1107909 (25 bp)
AGCAAGAACTTGTCTTCTCCGTACT
LOC_Os04g02870
Os.18127.1.A1_at--1052--9891Chr04:1107838..1107862 (25 bp)
TACTCATGGGTGGTTCGTAGTCGAA
LOC_Os04g02870
Os.18127.1.A1_at--1071--6611Chr04:1107793..1107817 (25 bp)
GTTGACCTGGAACTCCGTACTAGTA
LOC_Os04g02870
Os.18127.1.A1_at--178--2391Chr04:1107735..1107759 (25 bp)
AAACTCTGTGCGATGTACCTGTGCC
LOC_Os04g02870
Os.18127.1.A1_at--346--3891Chr04:1107717..1107741 (24 bp)
CTGTGCCACAACGTTTTCTATGACT
LOC_Os04g02870
Target Sequence 
GAAGCTACTCATTCTACCAAGTTGTTGGACAGGGTGATTTCTGTTGAGTATGCCTTCAGGGATGATACAGAACGAGGTGN
CAGGTATGATGGTGCAAGAGGTGGCTATGGTAGGCGAGATGATAGTCCATATCGTCGATCAGTTAGTCCAGTGTACAGGT
CACGCCCAAGTCCTGACTACGGTCGTCAAAGGAGTCCTGTGTACGGTTCGTATGACAGGAGTCCTGTTAATGATCGCTAT
CGAAGCCGATCTCCTGTCCGGCGATCAAGATCCCCACTTGCCAACAGAAGAGCTTATGATTGACAGAGTTTTCTCAAGGG
TGGTTGGCTGGTTGCTGAAGGGNTTGCATCTGCCTCTCTAGATCTTTAGCAGTGATAGCAAGAACTTGTCTTCTCCGTAC
TATATATATAATTTAGATATGGGTACTCATGGGTGGTTCGTAGTCGAACTGAAAATCTTTTACCTTTTGTTGACCTGGAA
CTCCGTACTAGTATAATTTAGATATGATGTGTTGTGCATCAAGGCAAAACTCTGTGCGATGTACCTGTGCCACAACGTTT
TCTATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18127.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis