Browse Element(s) Details


Os.182.1.S1_at

Description gb:AF441191.1
DB_XREF= gi:17066589
GEN=CaM
TID=Os.182.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.182 (NCBI UniGene Cluster)
DEF=Oryza sativa clone 15079 calmodulin (CaM) mRNA, complete cds.
PROD=calmodulin
FL= gb:AK071852.1 gb:AF441191.1 gb:AK104031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4878011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.182.1.S1_at--1029--5891Chr07:29196469..29196493 (25 bp)
GAGCTCCGCCATGTGATGACAAATC
LOC_Os07g48780
Os.182.1.S1_at--774--4391Chr07:29196340..29196364 (25 bp)
GCCAAGTGAGCCATGGAACCATACT
LOC_Os07g48780
Os.182.1.S1_at--989--6591Chr07:29196302..29196326 (25 bp)
GATTGTGTGTTGCATAGTCCTAGTT
LOC_Os07g48780
Os.182.1.S1_at--219--7251Chr07:29196286..29196310 (25 bp)
GTCCTAGTTAAGATGCAACACTTGT
LOC_Os07g48780
Os.182.1.S1_at--733--3113Chr06:30585360..30585380 (21 bp)
AATTTCCAGTGAAGCATCCTACTAG
NONE
Os.182.1.S1_at--397--4971Chr07:29196242..29196266 (25 bp)
GCATCCTACTAGCTGTAGTCGCTAA
LOC_Os07g48780
Os.182.1.S1_at--610--10291Chr07:29196210..29196234 (25 bp)
TTTCCTGCTATGTTCCTCTGAAGTG
LOC_Os07g48780
Os.182.1.S1_at--778--7471Chr07:29196188..29196212 (25 bp)
GTGTGTTTTCAGATCTCTTGTGTTT
LOC_Os07g48780
Os.182.1.S1_at--854--7071Chr07:29196152..29196176 (25 bp)
GTAATTCTTGTCCTTGGTATGTCCA
LOC_Os07g48780
Os.182.1.S1_at--391--771Chr07:29196134..29196158 (25 bp)
ATGTCCAGATTGCAGTTGGGCCTGT
LOC_Os07g48780
Os.182.1.S1_at--902--3291Chr07:29196090..29196114 (25 bp)
CATCAATTTATGCTCGAGTCTAGTA
LOC_Os07g48780
Target Sequence 
GAGCTCCGCCATGTGATGACAAATCTTGGCGAGAAGCTAACTGACGAGGAGGTGGATGAGATGATCCGTGAGGCTGATGT
TGATGGTGATGGTCAGATAAACTATGAGGAGTTTGTGAAGGTCATGATGGCCAAGTGAGCCATGGAACCATACTCTAAGG
CAGAGGAGATTGTGTGTTGCATAGTCCTAGTTAAGATGCAACACTTGTTTTATCAATTTCCAGTGAAGCATCCTACTAGC
TGTAGTCGCTAAAAAGGATTTTCCTGCTATGTTCCTCTGAAGTGTGTTTTCAGATCTCTTGTGTTTTATGTGAACCAGTA
ATTCTTGTCCTTGGTATGTCCAGATTGCAGTTGGGCCTGTATGTAGTTATATATTTTTTCATCAATTTATGCTCGAGTCT
AGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis