Browse Element(s) Details


Os.18211.1.S1_at

Description gb:AK101458.1
DB_XREF= gi:32986667
TID=Os.18211.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative serinethreonine protein kinase (OJ1705B08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040C13, full insert sequence.
FL= gb:AK101458.1 gb:AK060784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0298011/11Protein kinase domain containing protein, expressed
LOC_Os05g355401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18211.1.S1_at--775--1271Chr03:1195671..1195695 (25 bp)
AGATCGGTGGCGCTATACTCAAAAG
LOC_Os03g02980
Os.18211.1.S1_at--856--5191Chr03:1195695..1195719 (25 bp)
GCAATCATCTTGCTCACATTTGTAT
LOC_Os03g02980
Os.18211.1.S1_at--192--9751Chr03:1195733..1195757 (25 bp)
TAATTTGCCACTGAATCCGCCGTTT
LOC_Os03g02980
Os.18211.1.S1_at--939--471Chr03:1195769..1195793 (25 bp)
ATCTGATCAGCAACGTATCCATAGG
LOC_Os03g02980
Os.18211.1.S1_at--314--8891Chr03:1195807..1195831 (25 bp)
TGAGGAGCCATCTATGCAGTGCCCA
LOC_Os03g02980
Os.18211.1.S1_at--924--7291Chr03:1195825..1195849 (25 bp)
GTGCCCAGCTGACCGGACAACAGGA
LOC_Os03g02980
Os.18211.1.S1_at--760--6571Chr03:1195915..1195939 (25 bp)
GATTCCGTGGTAAACTTCAAGCAAG
LOC_Os03g02980
Os.18211.1.S1_at--939--8751Chr03:1195943..1195967 (25 bp)
TGTTTTGTTCCCCACGAGTATTAGT
LOC_Os03g02980
Os.18211.1.S1_at--46--6091Chr03:1195958..1195982 (25 bp)
GAGTATTAGTCTTTGCCTCCAACTT
LOC_Os03g02980
Os.18211.1.S1_at--604--6432Chr03:1196038..1196062 (25 bp)
GATCATAGTCCATGTGTTCTTTTTG
LOC_Os03g02980
Os.18211.1.S1_at--1003--5571Chr03:1196115..1196139 (25 bp)
GAAATGACCTCTTGGCTCTGTATAT
LOC_Os03g02980
Target Sequence 
AGATCGGTGGCGCTATACTCAAAAGCAATCATCTTGCTCACATTTGTATTGCAAGAAGCAACTAATTTGCCACTGAATCC
GCCGTTTTCCCTTTCATCATCTGATCAGCAACGTATCCATAGGTACATAGCTAATTTGAGGAGCCATCTATGCAGTGCCC
AGCTGACCGGACAACAGGAGAGATATGTCCAGAACTAACTTTTACATGGGAAATATTGGTGCACAAAGAAGTGAAAGTTA
AATTGATTCCGTGGTAAACTTCAAGCAAGCTTTGTTTTGTTCCCCACGAGTATTAGTCTTTGCCTCCAACTTTTTTTTTG
TCTAGGAGATGCTTACTTGGGGGAACTTTTGTAATGTTTTGTTTGCATGATCATAGTCCATGTGTTCTTTTTGTATATAA
TATATAATAACACTTCTAAGTTGTACAGTTATTTGCCATAGAACTGAAATGACCTCTTGGCTCTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis