Browse Element(s) Details


Os.18211.2.S1_x_at

Description gb:NM_187578.1
DB_XREF= gi:34902241
GEN=OJ1705B08.12
TID=Os.18211.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18211 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative serinethreonine protein kinase (OJ1705B08.12), mRNA.
PROD=Putative serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0298011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18211.2.S1_x_at--986--7151Chr03:1193518..1193542 (25 bp)
GTCTACTTCCCATGAATCAACAGCT
LOC_Os03g02980
Os.18211.2.S1_x_at--868--8291Chr03:1193580..1193604 (25 bp)
GGCTTCAACTCCTTAACCAGTATAT
LOC_Os03g02980
Os.18211.2.S1_x_at--247--1091Chr03:1194249..1194273 (25 bp)
AGGGCTGGACTTGGAGGCACTATCT
LOC_Os03g02980
Os.18211.2.S1_x_at--560--1551Chr03:1194291..1194315 (25 bp)
AGCTATTTGGAACGAGGCCCTTAAT
LOC_Os03g02980
Os.18211.2.S1_x_at--687--2691Chr03:1194365..1194389 (25 bp)
AAGCTCATGTCAATTTCCTGCCTAA
LOC_Os03g02980
Os.18211.2.S1_x_at--688--691Chr03:1194392..1194416 (25 bp)
ATGACCATCGTCCATCTCGAAATGT
LOC_Os03g02980
Os.18211.2.S1_x_at--192--1011Chr03:1194423..1194447 (25 bp)
AGGATTGGATTTCACCAGGCTCGTT
LOC_Os03g02980
Os.18211.2.S1_x_at--1075--6831Chr03:1194445..1194469 (25 bp)
GTTTCTGTCTGTTCCTGGGCTGAAA
LOC_Os03g02980
Os.18211.2.S1_x_at--188--6471Chr03:1194607..1194631 (25 bp)
GATAACACCGAGATGCCAGATGCAG
LOC_Os03g02980
Os.18211.2.S1_x_at--1077--5491Chr03:1194665..1194731 (25 bp)
GAACAACTGGTGCTCTTTCGTTTTT
LOC_Os03g02980
Os.18211.2.S1_x_at--49--10631Chr03:1194723..1194747 (25 bp)
TTCGTTTTTCCTTGCACTTCATGGA
LOC_Os03g02980
Target Sequence 
GTCTACTTCCCATGAATCAACAGCTGCAGAAAATCTGCTAAATCCACCTTATTGTTACACAAGGCTTCAACTCCTTAACC
AGTATATTGTTGTTCTTACAGAACTTGCAGAGGAGAAGCTTTTTAAAGGGCTGGACTTGGAGGCACTATCTGTTGAACTT
ATAATATTAGCTATTTGGAACGAGGCCCTTAATGCATGTAGTTTATCCACGGATGCTACACATGATGGATTTTTTTTGAC
CCAAGCTCATGTCAATTTCCTGCCTAAGAATGACCATCGTCCATCTCGAAATGTAGTACAAGGATTGGATTTCACCAGGC
TCGTTTCTGTCTGTTCCTGGGCTGAAAGTGGCTTTATCAAGGCATATGACCGTGCAGAGAAGATATCACATAGGTTGCGG
GACAACAATGATAACACCGAGATGCCAGATGCAGTGGAGATCATATTCCAGACAGCTTTAATATATGGAACAACTGGTGC
TCTTTCGTTTTTCCTTGCACTTCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18211.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis