Browse Element(s) Details


Os.18239.1.S1_at

Description gb:AK102077.1
DB_XREF= gi:32987286
TID=Os.18239.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082I12, full insert sequence.
FL= gb:AK102077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2027010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20220NANA2+11908864..11911908retrotransposon protein, putative, unclassified
LOC_Os02g20230NANA2+11912779..11913372transposon protein, putative, unclassified
LOC_Os02g20240NANA2+11916547..11917740retrotransposon protein, putative, unclassified
LOC_Os02g20250Os.53142.1.S1_at3/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_x_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.2.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.5.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20270Os.18239.1.S1_at10/112+11935197..11941762expressed protein
LOC_Os02g20280Os.35591.1.S1_a_at10/112+11944393..11949977expressed protein
LOC_Os02g20280OsAffx.19018.1.S1_x_at1/112+11944393..11949977expressed protein
LOC_Os02g20290OsAffx.12130.1.S1_at11/112+11950752..11953945hypothetical protein
LOC_Os02g20300OsAffx.29629.1.S1_at11/112+11958562..11960588hypothetical protein
LOC_Os02g20310Os.8731.2.S1_s_at11/112+11961692..11967963HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18239.1.S1_at--705--10831Chr02:11936131..11936155 (25 bp)
TTGGGTGGATCCATCTCCCGATCAT
LOC_Os02g20270
Os.18239.1.S1_at--745--4231Chr02:11936114..11936138 (25 bp)
CCGATCATGTATTTCTGCACCTTAT
LOC_Os02g20270
Os.18239.1.S1_at--633--6931Chr02:11935668..11935692 (25 bp)
GTAGAGGTTTCGCAACTGAGATAAT
LOC_Os02g20270
Os.18239.1.S1_at--1105--6451Chr02:11935465..11935673 (25 bp)
GATAATTACGTTCTGCTTGGCATAT
LOC_Os02g20270
Os.18239.1.S1_at--94--3211Chr02:11935522..11935546 (25 bp)
CAATGTGGATTCTGTGGTTCCTCTA
LOC_Os02g20270
Os.18239.1.S1_at--176--7911Chr02:11935507..11935531 (25 bp)
GGTTCCTCTATTCAACGCGATTTGG
LOC_Os02g20270
Os.18239.1.S1_at--573--3231Chr02:11935454..11935478 (25 bp)
CAAGAGTTGCATATACTGTTTTCAT
LOC_Os02g20270
Os.18239.1.S1_at--904--2071Chr02:11935347..11935371 (25 bp)
ACATTGTATCACATTCCCCATGGAA
LOC_Os02g20270
Os.18239.1.S1_at--614--4791Chr02:11935283..11935307 (25 bp)
GCTCGCATTCTTCAGGGACTTGGAT
LOC_Os02g20270
Os.18239.1.S1_at--892--10091Chr02:11935237..11935261 (25 bp)
TAGGCAGTCCTAGGTCTTCAAAGAA
LOC_Os02g20270
Os.18239.1.S1_at--864--491Chr02:11935196..11935220 (25 bp)
ATCGTTCAAAAATGCATCTTCCTTA
NONE
Target Sequence 
TTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTT
TCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTA
CGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAG
AAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCAT
GAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCC
TTTGCGGGGTGGTGTATTTATACCCCNAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTA
GGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis