Browse Element(s) Details


Os.18267.1.S1_at

Description gb:AK060448.1
DB_XREF= gi:32970466
TID=Os.18267.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-F09, full insert sequence.
FL= gb:AK060448.1 gb:AK099014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0563011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18267.1.S1_at--731--471Chr08:3003845..3003869 (25 bp)
ATCTGCAGCTCCTGAATCATCACAA
LOC_Os08g05630
Os.18267.1.S1_at--42--2691Chr08:3003822..3003846 (25 bp)
AAGCTGGTGGACATGGTGCATCGAC
LOC_Os08g05630
Os.18267.1.S1_at--131--7991Chr08:3003779..3003803 (25 bp)
GGATGATCTTCCTGTTTCAAGCCAG
LOC_Os08g05630
Os.18267.1.S1_at--413--1571Chr08:3003721..3003745 (25 bp)
AGCTCTTCGACTGATATCTCCAAAT
LOC_Os08g05630
Os.18267.1.S1_at--1028--1031Chr08:3003602..3003626 (25 bp)
AGGTGGTTCTAGCTGGTGCAACCTA
LOC_Os08g05630
Os.18267.1.S1_at--89--4871Chr08:3003569..3003593 (25 bp)
GCTAGAGCACATACCATGCCATGTT
LOC_Os08g05630
Os.18267.1.S1_at--928--4891Chr08:3003531..3003555 (25 bp)
GCTTACTTGATGCACTTCCAGAACT
LOC_Os08g05630
Os.18267.1.S1_at--881--3811Chr08:3003448..3003472 (25 bp)
CTGCCTATTAGGGAACGCTGTAAAT
LOC_Os08g05630
Os.18267.1.S1_at--17--9851Chr08:3003428..3003452 (25 bp)
TAAATTGCCATACTCTGTTTGCCGT
LOC_Os08g05630
Os.18267.1.S1_at--654--8711Chr08:3003322..3003346 (25 bp)
TGTCTCTTCACATCTATTTTCGGTA
LOC_Os08g05630
Os.18267.1.S1_at--800--10611Chr08:3003304..3003328 (25 bp)
TTCGGTAATCATGTCGGTGGCATCA
LOC_Os08g05630
Target Sequence 
ATCTGCAGCTCCTGAATCATCACAAGCTGGTGGACATGGTGCATCGACACCCTCAGATACAGAGAAGGATGATCTTCCTG
TTTCAAGCCAGCTTTTAGATAACAATACAGCTACTATGAAGGAGAGCTCTTCGACTGATATCTCCAAATCGGTGGAGAAT
TATAACAAGTTCAAGGAAGAACAAGAACTCAAACTACAAGAATGGCTTAGACAGTCTGAAGAAGCTGATGATAATAAAGA
GTGAGGTGGTTCTAGCTGGTGCAACCTAGTACATTTGCTAGAGCACATACCATGCCATGTTGTATCCTATACATGCTTAC
TTGATGCACTTCCAGAACTTCAGATGGTAACTGTTTATGAAGCAGAGCTTGTAATCATGATGAGGTACATAATTTATCTG
CCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGATCATCAATGT
ACTGTAGAATAGCCTGAACTATTGATCATGCATTTTTTTTCCATGTCTCTTCACATCTATTTTCGGTAATCATGTCGGTG
GCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis