Browse Element(s) Details


Os.18362.1.S1_at

Description gb:AK121092.1
DB_XREF= gi:37990715
TID=Os.18362.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066P11, full insert sequence.
FL= gb:AK121092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g370908/11expressed protein
LOC_Os01g053501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37050OsAffx.30695.2.S1_x_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.2.S1_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050Os.46643.1.S1_x_at3/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.4.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.3.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.1.S1_x_at1/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37060Os.46503.1.S1_at11/1110+19510933..19512780T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070OsAffx.30695.1.S1_x_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.1.S1_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.3.S1_x_at6/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.4.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30725.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070Os.46643.1.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37079NANA10+19522165..19522383hypothetical protein
LOC_Os10g37090Os.18362.1.S1_at8/1110+19524163..19526198expressed protein
LOC_Os10g37100OsAffx.30695.3.S1_x_at11/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.1.S1_x_at4/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.2.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.4.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100Os.46643.1.S1_x_at1/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37110Os.22726.1.A1_at9/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110Os.46643.1.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.2.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.4.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37120Os.46643.1.S1_x_at1/1110+19534604..19536163transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18362.1.S1_at--485--7235Chr02:17276341..17276360 (20 bp)
GTCCCCGGGTCTGGCAAACCTGGTG
NONE
Os.18362.1.S1_at--854--5132Chr10:19524685..19524709 (25 bp)
GCAAACCTGGTGTGACGTCTTGTCC
LOC_Os10g37090
Os.18362.1.S1_at--1160--8611Chr10:19524678..19524702 (25 bp)
TGGTGTGACGTCTTGTCCTTCATGG
LOC_Os10g37090
Os.18362.1.S1_at--818--7131Chr10:19524669..19524693 (25 bp)
GTCTTGTCCTTCATGGTTCGACTAT
LOC_Os10g37090
Os.18362.1.S1_at--115--7271Chr06:17031133..17031482 (25 bp)
GTCCTTCATGGTTCGACTATGTCGG
NONE
Os.18362.1.S1_at--583--9631NONE
TCATGGTTCGACTATGTCGGCTCTT
NONE
Os.18362.1.S1_at--944--10111Chr01:8528871..8528891 (21 bp)
TATGTCGGCTCTTCGACGTCATCTT
NONE
Os.18362.1.S1_at--138--1991Chr10:19524530..19524554 (25 bp)
ACTCTACGGCGTCCTATGTGCGCTC
LOC_Os10g37090
Os.18362.1.S1_at--823--100715Chr02:23419242..23419266 (25 bp)
TAGGATAGGATTGGTTTGTTTGGAT
NONE
Os.18362.1.S1_at--892--3871Chr10:19524224..19524248 (25 bp)
CTGTAATATTTCCTTATCTCTTCCC
LOC_Os10g37090
Os.18362.1.S1_at--566--9751Chr10:19524221..19524245 (25 bp)
TAATATTTCCTTATCTCTTCCCCAT
LOC_Os10g37090
Target Sequence 
GTCCCCGGGTCTGGCAAACCTGGTGTGACGTCTTGTCCTTCATGGTTCGACTATGTCGGCTCTTCGACGTCATCTTCCTC
AACGACCGTCGCGATCGTGTCCCCGTCATCATCTCCCGCGCGTCCTCGCGCACCTCGGTTCACAACGCTCTCCCATGCGT
CCACGACCACTCTACGGCGTCCTATGTGCGCTCCGCGGCTCGGCTACCTCGACATCATCGGCTCCCCGACTTCGGCTACA
TCGACCACGGCTACTCTNCGCACGGCTTNNAGCGACCACGGCTCTCCCGGCTCCTTCGCTTTGGCTACATCGACTATGGC
ANAAAGGGCTATTATCCGTGTTGAGCACTCTTGCCGGTTTATTCTCCAGTCCAAGTGTNCCGCGCTGCTCACGCTTGGAC
TGAGGGGGGATGTTAGAGTATATGGTAGTTAGAGTCATATTAGGATAGGATTGGTTTGTTTGGATTTCTTCCATANCTGT
AATATTTCCTTATCTCTTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis