Browse Element(s) Details


Os.18389.1.S1_at

Description gb:AU029311
DB_XREF= gi:3762559
DB_XREF=AU029311
CLONE=E30139_6Z
TID=Os.18389.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18389 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g280197/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27960OsAffx.19542.3.S1_x_at2/1111+15580479..15581846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27970NANA11+15583613..15584128hypothetical protein
LOC_Os11g27980OsAffx.31173.1.S1_x_at9/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_x_at3/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_at1/1111+15585400..15586281hypothetical protein
LOC_Os11g27990OsAffx.31174.3.S1_x_at5/1111+15589090..15590897hypothetical protein
LOC_Os11g27990OsAffx.31174.5.S1_x_at3/1111+15589090..15590897hypothetical protein
LOC_Os11g28000OsAffx.19044.1.S1_at10/1111+15594207..15596010hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_at10/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_x_at9/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.13764.1.S1_at1/1111+15599430..15600235hypothetical protein
LOC_Os11g28019Os.18389.1.S1_at7/1111+15605577..15605884NA
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28060OsAffx.7230.1.S1_at11/1111+15627698..15628866Cytochrome P450 71C4, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18389.1.S1_at--809--8611Chr11:15605552..15605576 (25 bp)
TGGTGTATGGTGTGACTCGGATACA
NONE
Os.18389.1.S1_at--254--7471Chr11:15605561..15605585 (25 bp)
GTGTGACTCGGATACAATGGCGACA
NONE
Os.18389.1.S1_at--813--331Chr11:15605572..15605596 (25 bp)
ATACAATGGCGACAGGACGCTCTCT
NONE
Os.18389.1.S1_at--796--5631Chr11:15605582..15605606 (25 bp)
GACAGGACGCTCTCTCCTCTGGCAG
LOC_Os11g28019
Os.18389.1.S1_at--197--8511Chr11:15605601..15605625 (25 bp)
TGGCAGCTGTCTCCTTCGGTGGCCA
LOC_Os11g28019
Os.18389.1.S1_at--1058--3751Chr11:15605666..15605690 (25 bp)
CTCTTCTAGGGTTAGGATTTCTCGG
LOC_Os11g28019
Os.18389.1.S1_at--1088--10071Chr11:15605672..15605696 (25 bp)
TAGGGTTAGGATTTCTCGGACGCGC
LOC_Os11g28019
Os.18389.1.S1_at--599--10091Chr11:15605678..15605702 (25 bp)
TAGGATTTCTCGGACGCGCGCGCTG
LOC_Os11g28019
Os.18389.1.S1_at--949--8611Chr11:15605740..15605764 (25 bp)
TGGTGAGGGACACCGGCGCATCACA
LOC_Os11g28019
Os.18389.1.S1_at--432--6191Chr11:15605815..15605839 (25 bp)
GAGGACACGGTTTCTTGATGTGTTC
LOC_Os11g28019
Os.18389.1.S1_at--545--4831Chr11:15605913..15605937 (25 bp)
GCTACACCACGTGCACATCATTTGT
NONE
Target Sequence 
TGGTGTATGGTGTGACTCGGATACAATGGCGACAGGACGCTCTCTCCTCTGGCAGCTGTCTCCTTCGGTGGCCACCTTCT
CCCNNCGGTGAGTTCCTCACCTTCCCCTCTCCCCNNCTCTTCTAGGGTTAGGATTTCTCGGACGCGCGCGCTGCTGCTGC
GGCGGTGATGGCGCATGGCGATGGCAGGTGTGGTGAGGGACACCGGCGCATCACACCCTCTCGCCATGGCCGTTGAANNT
TCGCCGCTGCTGCAAGGAGAAGCAGGAGGACACGGTTTCTTGATGTGTTCTTGATTTCTNCCACTGTTTCTTTTATCTNT
TAGTNCATGTTCTAGGTTAATGTTGTAGAATAAACANATCACAGCTACACCACGTGCACATCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis