Browse Element(s) Details


OsAffx.31175.1.S1_x_at

Description tigr:9639.m02521
TID=OsAffx.31175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g279803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27910NANA11+15558602..15561758retrotransposon protein, putative, unclassified
LOC_Os11g27920NANA11+15562642..15565385hypothetical protein
LOC_Os11g27930OsAffx.7227.1.S1_at10/1111+15568720..15570173hypothetical protein
LOC_Os11g27940OsAffx.7228.1.S1_at11/1111+15572841..15574059hypothetical protein
LOC_Os11g27950OsAffx.31869.5.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.1.S1_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.38764.1.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.54151.1.S1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.45173.1.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.2.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27960OsAffx.19542.3.S1_x_at2/1111+15580479..15581846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27970NANA11+15583613..15584128hypothetical protein
LOC_Os11g27980OsAffx.31173.1.S1_x_at9/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_x_at3/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_at1/1111+15585400..15586281hypothetical protein
LOC_Os11g27990OsAffx.31174.3.S1_x_at5/1111+15589090..15590897hypothetical protein
LOC_Os11g27990OsAffx.31174.5.S1_x_at3/1111+15589090..15590897hypothetical protein
LOC_Os11g28000OsAffx.19044.1.S1_at10/1111+15594207..15596010hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_at10/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_x_at9/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.13764.1.S1_at1/1111+15599430..15600235hypothetical protein
LOC_Os11g28019Os.18389.1.S1_at7/1111+15605577..15605884NA

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31175.1.S1_x_at--271--4511Chr11:15584718..15584742 (25 bp)
GCCGTTGCAGCCGATGGAGTGTCCT
NONE
OsAffx.31175.1.S1_x_at--882--1671Chr11:15584726..15584750 (25 bp)
AGCCGATGGAGTGTCCTCCGAGGCA
NONE
OsAffx.31175.1.S1_x_at--464--831Chr11:15584731..15584755 (25 bp)
ATGGAGTGTCCTCCGAGGCACCTCG
NONE
OsAffx.31175.1.S1_x_at--720--931NONE
AGGCACCTCGCCGTTCATGGGAGGA
NONE
OsAffx.31175.1.S1_x_at--904--1751NONE
ACCTCGCCGTTCATGGGAGGAAGAG
NONE
OsAffx.31175.1.S1_x_at--258--7491Chr11:15585343..15585367 (25 bp)
GTGGGCTCTATCACCCGCATGTAGA
NONE
OsAffx.31175.1.S1_x_at--626--391Chr11:15585352..15585377 (25 bp)
ATCACCCGCATGTAGAGGAAGTCCA
NONE
OsAffx.31175.1.S1_x_at--949--8511NONE
TGGGACCGGCAAGGTTGGCCCCACT
NONE
OsAffx.31175.1.S1_x_at--531--10471Chr11:15585417..15585437 (21 bp)
TTACCCCGGTGCTCCGCGGTGAGGT
LOC_Os11g27980
OsAffx.31175.1.S1_x_at--542--1011Chr11:15585571..15585595 (25 bp)
AGGTACATCTACTCATCGTCGGACG
LOC_Os11g27980
OsAffx.31175.1.S1_x_at--497--9351Chr11:15585619..15585640 (22 bp)
TCGAACAGCGGACGCGCCAGCTTAA
LOC_Os11g27980
Target Sequence 
GCCGTTGCAGCCGATGGAGTGTCCTCCGAGGCACCTCGCCGTTCATGGGAGGAAGAGGATGAGCGTGGCGAGGAGGTCCA
CGGCGGCGGCGGCGGCGGTGGGCTCTATCACCCGCATGTAGAGGAAGTCCAGGGCTCCGGCGACTGGGACCGGCAAGGTT
GGCCCCACTTTACCCCGGTGCTCCGCGGTGAGGTGGCGCGGTACGGCGAGCTCATCGGCGCATGCTACGCGGCGTTGGAG
GAGGACCCTTCGTTGCCGAGGTACATGAACTGCAAGTATGGCAAGCTCCGGATGTTGGAGGACGCCGGGGCCGGGTACGA
GGTGACGAGGTACATCTACTCATCGTCGGACGCCGCCGTGCCGGGCATAGAGGCGTCGAACAGCGGACGCGCCAGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31175.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis