Browse Element(s) Details


OsAffx.19045.1.S1_at

Description tigr:9639.m02523
TID=OsAffx.19045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2801010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27950OsAffx.31869.5.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.1.S1_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.38764.1.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.54151.1.S1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.45173.1.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.2.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27960OsAffx.19542.3.S1_x_at2/1111+15580479..15581846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27970NANA11+15583613..15584128hypothetical protein
LOC_Os11g27980OsAffx.31173.1.S1_x_at9/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_x_at3/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_at1/1111+15585400..15586281hypothetical protein
LOC_Os11g27990OsAffx.31174.3.S1_x_at5/1111+15589090..15590897hypothetical protein
LOC_Os11g27990OsAffx.31174.5.S1_x_at3/1111+15589090..15590897hypothetical protein
LOC_Os11g28000OsAffx.19044.1.S1_at10/1111+15594207..15596010hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_at10/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_x_at9/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.13764.1.S1_at1/1111+15599430..15600235hypothetical protein
LOC_Os11g28019Os.18389.1.S1_at7/1111+15605577..15605884NA
LOC_Os11g28030NANA11+15616968..15618851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28040Os.46314.3.S1_at3/1111+15621198..15621550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28050OsAffx.23366.2.S1_s_at1/1111+15623381..15626975transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19045.1.S1_at--557--8111Chr11:15600168..15600191 (24 bp)
GGACTTCATCAGAAGGCGATGCGGT
LOC_Os11g28010
OsAffx.19045.1.S1_at--415--8371NONE
GGCGATGCGGTTATACGGTGCTAAA
NONE
OsAffx.19045.1.S1_at--383--4671Chr11:15599569..15599590 (22 bp)
GCGGTTATACGGTGCTAAAATTTCA
LOC_Os11g28010
OsAffx.19045.1.S1_at--376--9931Chr11:15599562..15599586 (25 bp)
TACGGTGCTAAAATTTCAAACTATT
LOC_Os11g28010
OsAffx.19045.1.S1_at--46--2431Chr11:15599529..15599553 (25 bp)
AAAAGTGCCGAAAATCCCAAAGCTG
LOC_Os11g28010
OsAffx.19045.1.S1_at--416--3031Chr11:15599517..15599541 (25 bp)
AATCCCAAAGCTGGCCGAAGTTTTG
LOC_Os11g28010
OsAffx.19045.1.S1_at--901--2351Chr11:15599511..15599535 (25 bp)
AAAGCTGGCCGAAGTTTTGAGCGAA
LOC_Os11g28010
OsAffx.19045.1.S1_at--185--4711Chr11:15599508..15599532 (25 bp)
GCTGGCCGAAGTTTTGAGCGAAATC
LOC_Os11g28010
OsAffx.19045.1.S1_at--201--5631Chr11:15599493..15599517 (25 bp)
GAGCGAAATCGGAAGTGAAAACCTA
LOC_Os11g28010
OsAffx.19045.1.S1_at--260--9431Chr11:15599485..15599509 (25 bp)
TCGGAAGTGAAAACCTAGACAACAT
LOC_Os11g28010
OsAffx.19045.1.S1_at--248--2211Chr11:15599467..15599491 (25 bp)
ACAACATAAATTTCGCTGTCTTCGC
LOC_Os11g28010
Target Sequence 
GGACTTCATCAGAAGGCGATGCGGTTATACGGTGCTAAAATTTCAAACTATTTTTGTTCAAAAAGTGCCGAAAATCCCAA
AGCTGGCCGAAGTTTTGAGCGAAATCGGAAGTGAAAACCTAGACAACATAAATTTCGCTGTCTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis