Browse Element(s) Details


OsAffx.31173.1.S1_x_at

Description tigr:9639.m02518
TID=OsAffx.31173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g279809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27910NANA11+15558602..15561758retrotransposon protein, putative, unclassified
LOC_Os11g27920NANA11+15562642..15565385hypothetical protein
LOC_Os11g27930OsAffx.7227.1.S1_at10/1111+15568720..15570173hypothetical protein
LOC_Os11g27940OsAffx.7228.1.S1_at11/1111+15572841..15574059hypothetical protein
LOC_Os11g27950OsAffx.31869.5.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.1.S1_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.38764.1.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.54151.1.S1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.45173.1.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.2.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27960OsAffx.19542.3.S1_x_at2/1111+15580479..15581846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27970NANA11+15583613..15584128hypothetical protein
LOC_Os11g27980OsAffx.31173.1.S1_x_at9/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_x_at3/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_at1/1111+15585400..15586281hypothetical protein
LOC_Os11g27990OsAffx.31174.3.S1_x_at5/1111+15589090..15590897hypothetical protein
LOC_Os11g27990OsAffx.31174.5.S1_x_at3/1111+15589090..15590897hypothetical protein
LOC_Os11g28000OsAffx.19044.1.S1_at10/1111+15594207..15596010hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_at10/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.19045.1.S1_x_at9/1111+15599430..15600235hypothetical protein
LOC_Os11g28010OsAffx.13764.1.S1_at1/1111+15599430..15600235hypothetical protein
LOC_Os11g28019Os.18389.1.S1_at7/1111+15605577..15605884NA

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31173.1.S1_x_at--21--8651Chr11:15585640..15585755 (25 bp)
TGGGCCGGTGGATGGCCAAACACAG
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--354--8011Chr11:15585740..15585764 (25 bp)
GGATGGCCAAACACAGGAGCTCCCC
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--652--1391Chr11:15585840..15585864 (25 bp)
AGACGCGCCGCTTTGGCTGCGCCAA
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--995--4511Chr11:15585846..15585870 (25 bp)
GCCGCTTTGGCTGCGCCAACAGCTG
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--210--4531NONE
GCCGCGACCAAGTCCTTCGCGAGGT
NONE
OsAffx.31173.1.S1_x_at--935--4131NONE
CGCGACCAAGTCCTTCGCGAGGTGT
NONE
OsAffx.31173.1.S1_x_at--794--4291Chr11:15585913..15585937 (25 bp)
CCTCTCCTGCGGTGAGGACGTGAGT
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--1015--5751Chr11:15585929..15585953 (25 bp)
GACGTGAGTGTCATGCTCGCCGGCC
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--870--8891Chr11:15585933..15585957 (25 bp)
TGAGTGTCATGCTCGCCGGCCACAG
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--675--9071Chr11:15585969..15585993 (25 bp)
TGCTTGCGCTGCTCTTGGCGTACGA
LOC_Os11g27980
OsAffx.31173.1.S1_x_at--815--9091Chr11:15585978..15586002 (25 bp)
TGCTCTTGGCGTACGACCTCGTCGA
LOC_Os11g27980
Target Sequence 
TGGGCCGGTGGATGGCCAAACACAGGAGCTCCCCCGTGTCGCGGTGACGGCGGCGGTGGCGACGTGAAGGTCGAGTCGGG
GTGCCTCAACATCTACACCTCCGCCAACGAGACGCGCCGCTTTGGCTGCGCCAACAGCTGCCGCGACCAAGTCCTTCGCG
AGGTGTCCCGCCTCGTCGCCTCCCTCTCCTGCGGTGAGGACGTGAGTGTCATGCTCGCCGGCCACAGCATGGGCGGCGTG
CTTGCGCTGCTCTTGGCGTACGACCTCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31173.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis