Browse Element(s) Details


OsAffx.7228.1.S1_at

Description tigr:9639.m02515
TID=OsAffx.7228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2794011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27880NANA11+15546933..15548814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27890OsAffx.7789.1.S1_x_at1/1111+15551601..15554159retrotransposon protein, putative, unclassified
LOC_Os11g27900Os.38751.1.A1_at5/1111+15555177..15557354retrotransposon protein, putative, unclassified
LOC_Os11g27900OsAffx.8338.1.S1_x_at1/1111+15555177..15557354retrotransposon protein, putative, unclassified
LOC_Os11g27900OsAffx.27810.1.S1_x_at1/1111+15555177..15557354retrotransposon protein, putative, unclassified
LOC_Os11g27910NANA11+15558602..15561758retrotransposon protein, putative, unclassified
LOC_Os11g27920NANA11+15562642..15565385hypothetical protein
LOC_Os11g27930OsAffx.7227.1.S1_at10/1111+15568720..15570173hypothetical protein
LOC_Os11g27940OsAffx.7228.1.S1_at11/1111+15572841..15574059hypothetical protein
LOC_Os11g27950OsAffx.31869.5.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.1.S1_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.38764.1.S1_x_at7/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.54151.1.S1_x_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.48015.1.A1_at4/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950Os.45173.1.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_x_at2/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.4.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27950OsAffx.31869.2.S1_at1/1111+15575102..15577530retrotransposon protein, putative, unclassified
LOC_Os11g27960OsAffx.19542.3.S1_x_at2/1111+15580479..15581846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g27970NANA11+15583613..15584128hypothetical protein
LOC_Os11g27980OsAffx.31173.1.S1_x_at9/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_x_at3/1111+15585400..15586281hypothetical protein
LOC_Os11g27980OsAffx.31175.1.S1_at1/1111+15585400..15586281hypothetical protein
LOC_Os11g27990OsAffx.31174.3.S1_x_at5/1111+15589090..15590897hypothetical protein
LOC_Os11g27990OsAffx.31174.5.S1_x_at3/1111+15589090..15590897hypothetical protein
LOC_Os11g28000OsAffx.19044.1.S1_at10/1111+15594207..15596010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7228.1.S1_at--308--5771Chr11:15573416..15573440 (25 bp)
GACGACGCCGGGACTTCTAAGAAGC
LOC_Os11g27940
OsAffx.7228.1.S1_at--767--951Chr11:15573561..15573585 (25 bp)
AGGACAAAGCTGGATCGCCGGCTAT
LOC_Os11g27940
OsAffx.7228.1.S1_at--404--8571Chr11:15573618..15573642 (25 bp)
TGGTTCAAGCGCGTTGCCTATCCAA
LOC_Os11g27940
OsAffx.7228.1.S1_at--425--7571Chr11:15573659..15573683 (25 bp)
GGGCGAAAGCCCTTTTGACCATTGC
LOC_Os11g27940
OsAffx.7228.1.S1_at--331--5851Chr11:15573675..15573699 (25 bp)
GACCATTGCTAGTTTGGCATCCAAG
LOC_Os11g27940
OsAffx.7228.1.S1_at--660--2751Chr11:15573697..15573721 (25 bp)
AAGAAAGGCGCTTCGGCTGGTCAGA
LOC_Os11g27940
OsAffx.7228.1.S1_at--943--9991Chr11:15573746..15573770 (25 bp)
TAGCTGGTGGCTTCTTTGATAGTGA
LOC_Os11g27940
OsAffx.7228.1.S1_at--220--3311Chr11:15573823..15573847 (25 bp)
CACACCGCTCTGACGAAAAGGCATT
LOC_Os11g27940
OsAffx.7228.1.S1_at--71--6351Chr11:15573922..15573946 (25 bp)
GATGCTCTCCAAATGGCTGTGGCGA
LOC_Os11g27940
OsAffx.7228.1.S1_at--609--4591Chr11:15573943..15573967 (25 bp)
GCGAATGTCTTTGGCGTCGATCGGA
LOC_Os11g27940
OsAffx.7228.1.S1_at--12--6411Chr11:15573961..15573985 (25 bp)
GATCGGATGGTAGTCCTGCTGTCCC
LOC_Os11g27940
Target Sequence 
GACGACGCCGGGACTTCTAAGAAGCGGAAATGGGGAGGGGGGGTCAGAGGACAAAGCTGGATCGCCGGCTATACCCCTAG
CCCGGACCATACGAAGCCTGGTGCTGGTTCAAGCGCGTTGCCTATCCAACCGCACGACATTGTTGGGGCGAAAGCCCTTT
TGACCATTGCTAGTTTGGCATCCAAGAAAGGCGCTTCGGCTGGTCAGAAGAGACGCATCGGTGTAGTAAGGATAGCTGGT
GGCTTCTTTGATAGTGAGGCATCCTCTCAGGAGATGCCCACTTCGCCGGCCACCCATCCTTCGACTCAACACACCGCTCT
GACGAAAAGGCATTCGACGCCCCCAGCCTCCAGCGATGTCGACCGGCCGATCGGTGGTAGTGCTTTGGCCACCGCTGCTG
GTTCGGCCGATGCTCTCCAAATGGCTGTGGCGAATGTCTTTGGCGTCGATCGGATGGTAGTCCTGCTGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis