Browse Element(s) Details


Os.18432.1.A1_s_at

Description gb:AU029545
DB_XREF= gi:3762793
DB_XREF=AU029545
CLONE=E31057_8Z
TID=Os.18432.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18432 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200681.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5276011/11kinase, pfkB family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein
LOC_Os03g52780Os.4911.1.S1_s_at11/113+30209402..30212697expressed protein
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18432.1.A1_s_at--368--6091Chr03:30196675..30196699 (25 bp)
GAGTACCAACCTTCGATCCAAAGAT
LOC_Os03g52760
Os.18432.1.A1_s_at--722--5011Chr03:30195211..30195235 (25 bp)
GCAGTAAAACGACCTTGTACACATA
LOC_Os03g52760
Os.18432.1.A1_s_at--550--6671Chr03:30195140..30195164 (25 bp)
GTTGCATAAATCACTCCAAGAAGCG
LOC_Os03g52760
Os.18432.1.A1_s_at--1009--5371Chr03:30195095..30195119 (25 bp)
GAAGCAAGCTAATAGTCCGGCAACT
LOC_Os03g52760
Os.18432.1.A1_s_at--26--9291Chr03:30195080..30195104 (25 bp)
TCCGGCAACTGACAACGGTGATGTT
LOC_Os03g52760
Os.18432.1.A1_s_at--900--3251Chr03:30195068..30195092 (25 bp)
CAACGGTGATGTTTGTTCCATAAAT
LOC_Os03g52760
Os.18432.1.A1_s_at--521--2291Chr03:30195047..30195071 (25 bp)
AAATGAACTGACTTCGCTGCCAAGC
LOC_Os03g52760
Os.18432.1.A1_s_at--579--10751Chr03:30194994..30195018 (25 bp)
TTGACATCCAAGTTTCCACACTGAG
LOC_Os03g52760
Os.18432.1.A1_s_at--36--4551Chr03:30194911..30194935 (25 bp)
GCCCTCATACTCAGGTTATCATGGG
LOC_Os03g52760
Os.18432.1.A1_s_at--949--10151Chr03:30194895..30194919 (25 bp)
TATCATGGGAATCGCTGAGTGCAGA
LOC_Os03g52760
Os.18432.1.A1_s_at--445--6891Chr03:30194856..30194880 (25 bp)
GTATAAGATCAGCTGATGCTCTCTG
LOC_Os03g52760
Target Sequence 
GAGTACCAACCTTCGATCCAAAGATGCTGCAGGCTGTTNAAACAAATACTTGAGAANGCAGTAAAACGACCTTGTACACA
TATAAACGGCAACACGTTTACCTTCCAGAGATCAAGTATNCACGATGAGTTGCATAAATCACTCCAAGAAGCGGCTATGC
TGGTGTGTGAGCAGAAGCAAGCTAATAGTCCGGCAACTGACAACGGTGATGTTTGTTCCATAAATGAACTGACTTCGCTG
CCAAGCTGAATTTGNCCTTGAAATAATGTGAAACTTGACATCCAAGTTTCCACACTGAGATCTATAATCTGTGTAAACAC
ATGACCCAACAAAATGGTAAAAAATATACACTNNNNTGCCCTCATACTCAGGTTATCATGGGAATCGCTGAGTGCAGAAT
TGGATNTACTCCGTATAAGATCAGCTGATGCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18432.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis