Browse Element(s) Details


Os.18445.1.S1_at

Description gb:AK103406.1
DB_XREF= gi:32988615
TID=Os.18445.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128D10, full insert sequence.
FL= gb:AK103406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1283011/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os07g12840NANA7+7356513..7360612retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12850OsAffx.25180.1.S1_at11/117+7361845..7368397Protein kinase domain containing protein
LOC_Os07g12850Os.50043.1.A1_at1/117+7361845..7368397Protein kinase domain containing protein
LOC_Os07g12860Os.35344.18.S1_x_at9/117+7370284..7376179transposon protein, putative, Mutator sub-class
LOC_Os07g12860Os.35344.3.S1_x_at8/117+7370284..7376179transposon protein, putative, Mutator sub-class
LOC_Os07g12860OsAffx.22940.5.S1_x_at3/117+7370284..7376179transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18445.1.S1_at--949--7191Chr07:7348990..7349014 (25 bp)
GTCGTGTGTACAACATTGCTCCGTA
LOC_Os07g12830
Os.18445.1.S1_at--112--5531Chr07:7349204..7349227 (24 bp)
GAAAAGACTCGACCGCTCTGTTCAA
LOC_Os07g12830
Os.18445.1.S1_at--1033--1451Chr07:7349550..7349574 (25 bp)
AGAAGTGCCTTGTTGGATTCCTCGA
LOC_Os07g12830
Os.18445.1.S1_at--500--7931Chr07:7349564..7349588 (25 bp)
GGATTCCTCGATCCCAATGAGTAGA
LOC_Os07g12830
Os.18445.1.S1_at--270--1191Chr07:7349583..7349607 (25 bp)
AGTAGATGCGCCATTGAGCCTGAGG
LOC_Os07g12830
Os.18445.1.S1_at--1158--8911Chr07:7349597..7349621 (25 bp)
TGAGCCTGAGGCCAGAACTCCACTT
LOC_Os07g12830
Os.18445.1.S1_at--133--5631Chr07:7349638..7349662 (25 bp)
GACACTAGTCCCTGATGCGTATCCA
LOC_Os07g12830
Os.18445.1.S1_at--220--2231Chr07:7349691..7349715 (25 bp)
ACAAGTGTTTTGCTTCATTGCTAAG
LOC_Os07g12830
Os.18445.1.S1_at--34--8751Chr07:7349782..7349806 (25 bp)
TGTACAAATTCCTTCACCATTGATT
LOC_Os07g12830
Os.18445.1.S1_at--1109--1951Chr07:7349883..7349907 (25 bp)
ACTGTGGTGCTGTTTTGGCTCTTTG
LOC_Os07g12830
Os.18445.1.S1_at--1046--4391Chr07:7349910..7349934 (25 bp)
GCCAACACATAGTGCTCTGTTTCTT
LOC_Os07g12830
Target Sequence 
GTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGGNAGTTGATATGCTTATGAAGGCTGCTGGAAAAGA
CTCGACCGCTCTGTTCAACAAATATCATGCATGGGTAAATTTTGAATTCCTCCNTGGAGAAGTGCCTTGTTGGATTCCTC
GATCCCAATGAGTAGATGCGCCATTGAGCCTGAGGCCAGAACTCCACTTCCTCTTTCTTGTCCGCGACACTAGTCCCTGA
TGCGTATCCATCACATGGAGACAGTTTAAGGAATGTAAACAAGTGTTTTGCTTCATTGCTAAGGAGATATAGATGCTGCT
TAACATTTTAGAAAAAAAAGAAAAGTTAGAAACTTGATCACCATTGTTATGTACAAATTCCTTCACCATTGATTGCTGAA
GAAAACAAAGAACATTTCCATCCATATGAATGTAATGTCAAGAAGATACATGTGTTTTAGATGAAGGGATACTGTGGTGC
TGTTTTGGCTCTTTGCAGCCAACACATAGTGCTCTGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis