Browse Element(s) Details


Os.18473.1.S1_at

Description gb:AK058589.1
DB_XREF= gi:32968607
TID=Os.18473.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05, full insert sequence.
FL= gb:AK058589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3505011/11prephenate dehydrogenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35030Os.10920.2.A1_a_at11/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35030Os.57178.1.S1_at10/116+20372826..20380401RNA-binding protein, putative, expressed
LOC_Os06g35040OsAffx.22848.4.S1_at2/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.4.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35040OsAffx.22848.3.S1_x_at1/116+20387741..20393686retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35050Os.18473.1.S1_at11/116+20399350..20402402prephenate dehydrogenase family protein, putative, expressed
LOC_Os06g35060OsAffx.27946.1.S1_at11/116+20403431..20404487heavy metal-associated domain containing protein, expressed
LOC_Os06g35070OsAffx.15750.1.S1_at11/116+20415539..20416236hypothetical protein
LOC_Os06g35080OsAffx.15751.1.S1_at11/116+20417778..20418955hypothetical protein
LOC_Os06g35090OsAffx.15752.1.S1_at11/116+20421282..20422668hypothetical protein
LOC_Os06g35100OsAffx.5017.1.S1_at11/116+20426189..20427164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006571biological_processtyrosine biosynthesis
GO:0004665molecular_functionprephenate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18473.1.S1_at--1069--5031Chr06:20401831..20401855 (25 bp)
GCAGATGCTCTATGGTAGGCTGCAT
LOC_Os06g35050
Os.18473.1.S1_at--664--1451Chr06:20401876..20401900 (25 bp)
AGAAGAGAGGGTCCCAATCCCGTAG
LOC_Os06g35050
Os.18473.1.S1_at--396--4231Chr06:20401895..20401919 (25 bp)
CCGTAGCCCCTTCAGTAAATATCAA
LOC_Os06g35050
Os.18473.1.S1_at--900--2991Chr06:20401919..20401943 (25 bp)
AATGAAGCCCAGTCCAGTGCTGCTG
LOC_Os06g35050
Os.18473.1.S1_at--1001--7691Chr06:20402126..20402150 (25 bp)
GGGTCCTAGGTTAAAATATCAATGT
LOC_Os06g35050
Os.18473.1.S1_at--617--5191Chr06:20402156..20402180 (25 bp)
GCAATAATTTTTTCAAACCCTGTTG
LOC_Os06g35050
Os.18473.1.S1_at--898--2611Chr06:20402171..20402195 (25 bp)
AACCCTGTTGTGATATTTTCATTGG
LOC_Os06g35050
Os.18473.1.S1_at--562--3711Chr06:20402212..20402236 (25 bp)
CTAGATGTCTTTCTCAGTGTTGTGA
LOC_Os06g35050
Os.18473.1.S1_at--863--6491Chr06:20402235..20402259 (25 bp)
GATAGGAGCTGTATGCATTCAATGT
LOC_Os06g35050
Os.18473.1.S1_at--1073--2791Chr06:20402293..20402317 (25 bp)
AAGATGTAACCATGTCCTCTGTTTT
LOC_Os06g35050
Os.18473.1.S1_at--1135--9551Chr06:20402344..20402368 (25 bp)
TCTTTTGTTCTTTTACACTGAGCAT
LOC_Os06g35050
Target Sequence 
GCAGATGCTCTATGGTAGGCTGCATAATGTACTAAGAAAGCAGATAGAAGAGAGGGTCCCAATCCCGTAGCCCCTTCAGT
AAATATCAAATGAAGCCCAGTCCAGTGCTGCTGGGGCCTGGGAGCCTGGGACCCCTCTCTTCTCTCCTGTAAGGTTGTNN
CCACACAGAAGAAGTTGCACATATCCCNATATCNTCTGCNACACCCACCCCNNTACACTTGACAAAACAGAGAATTAGGC
NTAATACCNATGGCAAATAGGTGACAATTGGAAAANACCNATCACATATGTGAATAACATGTGGGTCCTAGGTTAAAATA
TCAATGTCATAGGCAATAATTTTTTCAAACCCTGTTGTGATATTTTCATTGGTACCAAGATACTAATTCTAGATGTCTTT
CTCAGTGTTGTGATAGGAGCTGTATGCATTCAATGTTTCTCTTAGGTGTTAGCTAAATATGCAAGGAATAAGATGTAACC
ATGTCCTCTGTTTTTGTTCTTTCATGAGTTGTAACGAAATTCTTTTGTTCTTTTACACTGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis