Browse Element(s) Details


Os.18593.2.S1_a_at

Description gb:AK106514.1
DB_XREF= gi:32991723
TID=Os.18593.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A09, full insert sequence.
FL= gb:AK106514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3240011/11GCK-like kinase MIK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18593.2.S1_a_at--1111--3231Chr07:19258351..19258375 (25 bp)
CAAGCTTCTGGTTCTGTATCTTCAC
LOC_Os07g32400
Os.18593.2.S1_a_at--782--1751Chr07:19258328..19258352 (25 bp)
ACCTGCACTCTCGTCATTGATAATT
LOC_Os07g32400
Os.18593.2.S1_a_at--271--5851Chr07:19257770..19257794 (25 bp)
GACCAGTTGTTCATACATTCCTTGA
LOC_Os07g32400
Os.18593.2.S1_a_at--481--91Chr07:19257754..19257778 (25 bp)
ATTCCTTGATTCCTTGATGCATCTC
LOC_Os07g32400
Os.18593.2.S1_a_at--25--10051Chr07:19257554..19257698 (25 bp)
TAGGGAGCTCGAAGGAGTCCTCGCT
LOC_Os07g32400
Os.18593.2.S1_a_at--42--1151Chr07:19257539..19257563 (25 bp)
AGTCCTCGCTGCAAAGTCTTCAAGA
LOC_Os07g32400
Os.18593.2.S1_a_at--422--5991Chr07:19257516..19257540 (25 bp)
GAGACGGCGACATCAGTTTTCGCAA
LOC_Os07g32400
Os.18593.2.S1_a_at--875--2331Chr07:19257493..19257517 (25 bp)
AAAGAAATCTGAACCTCCCTCTGAA
LOC_Os07g32400
Os.18593.2.S1_a_at--610--2291Chr07:19257452..19257476 (25 bp)
AAATGGCTAATACACCTTCCTTGGC
LOC_Os07g32400
Os.18593.2.S1_a_at--855--10231Chr07:19257409..19257433 (25 bp)
TTTGGCGAGGTTCCTTCTTACAAGG
LOC_Os07g32400
Os.18593.2.S1_a_at--971--10631Chr07:19257292..19257316 (25 bp)
TTCCCAAGATCTTAACTCCGTCTGA
LOC_Os07g32400
Target Sequence 
CAAGCTTCTGGTTCTGTATCTTCACCTGCACTCTCGTCATTGATAATTCCTTCTCTAAAAGAGGCTACTGGTGACAAGTT
TAACGGACCAGTTGTTCATACATTCCTTGATTCCTTGATGCATCTCGAAAAAGAGCTACCTGGATCTTGTGAGGTGCTGA
TTGGCAGAATGCTCCATCGGCTAGGGAGCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTC
GCAAAGAAATCTGAACCTCCCTCTGAACCTCCAAGTAACAAGAAAATGGCTAATACACCTTCCTTGGCTGCCCCTACCGT
AAGCCCTTTGGCGAGGTTCCTTCTTACAAGGTTTGTTTAGAGAAATTGTTTCCCTTTTCTTATTATTGCTTTCCCACAAC
AAAGAGTGAGTTGATGCCATTGGTGCAGGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18593.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis