Browse Element(s) Details


Os.18598.1.S1_at

Description gb:AB099850.1
DB_XREF= gi:38636548
GEN=r9-LOX1
TID=Os.18598.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18598 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds.
PROD=9-lipoxigenase
FL= gb:AK103565.1 gb:AB099850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4926011/11Lipoxygenase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein
LOC_Os03g49330OsAffx.22947.1.S1_x_at11/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.2.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.3.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.5.S1_x_at3/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18598.1.S1_at--1114--6031Chr03:28002337..28002361 (25 bp)
GAGATCTATCTTGGGCAGCGTGACA
LOC_Os03g49260
Os.18598.1.S1_at--698--4651Chr03:28002354..28002378 (25 bp)
GCGTGACACGCCAGAGTGGACATCA
LOC_Os03g49260
Os.18598.1.S1_at--918--391Chr03:28002375..28002399 (25 bp)
ATCAGACCCCAAGGCACTGGAAGCA
LOC_Os03g49260
Os.18598.1.S1_at--420--9711Chr03:28002470..28002494 (25 bp)
TCAAGAACCGGGTCGGTCCAGCCAA
LOC_Os03g49260
Os.18598.1.S1_at--379--3151Chr03:28002492..28002516 (25 bp)
CAATTTCCCCTACACACTGATGTTC
LOC_Os03g49260
Os.18598.1.S1_at--815--8791Chr03:28002512..28002536 (25 bp)
TGTTCCCCAACACGTCAGACAATAA
LOC_Os03g49260
Os.18598.1.S1_at--1027--4971Chr03:28002566..28002590 (25 bp)
GCATCCCCAATAGCATCTCAATATG
LOC_Os03g49260
Os.18598.1.S1_at--543--3111Chr03:28002585..28002609 (25 bp)
AATATGAGACTGCTGCACGCGTCAC
LOC_Os03g49260
Os.18598.1.S1_at--906--8331Chr03:28002636..28002660 (25 bp)
GGCTGTTATCTTAGGCCCTAGGGCA
LOC_Os03g49260
Os.18598.1.S1_at--1006--631Chr03:28002821..28002845 (25 bp)
ATGCAGCTTTACTCCTATGATGTTA
LOC_Os03g49260
Os.18598.1.S1_at--1061--10071Chr03:28002844..28002868 (25 bp)
TAGGGAGGCAGCTTCTGTGGTCAAA
LOC_Os03g49260
Target Sequence 
GAGATCTATCTTGGGCAGCGTGACACGCCAGAGTGGACATCAGACCCCAAGGCACTGGAAGCATTCAAGAGGTTCAGCAG
GCAGCTGGTGGAGATTGAGAGCAAAGTGTTGAACATGAACAAGGACCCCCTGCTCAAGAACCGGGTCGGTCCAGCCAATT
TCCCCTACACACTGATGTTCCCCAACACGTCAGACAATAAGGGGGCGGCTGAGGGGATCACTGCCAGGGGCATCCCCAAT
AGCATCTCAATATGAGACTGCTGCACGCGTCACGCGCTGCTGAGTTGGTGTAGGTTTGTGGCTGTTATCTTAGGCCCTAG
GGCACAAGCAATGAAGCTGCATAGTACTATTTGCTACAAATTATGCAAGAATAAAGTTTTAGTGCTAATAATAAAGTTAC
TGTTGTAGTGTTTGTCCCNTTTTTAAGCAGCTTCACATAGCAAGCTCAAATGAAGAGGCAATGCTGCAATATGGATGATT
AATTATGCAGCTTTACTCCTATGATGTTAGGGAGGCAGCTTCTGTGGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis