Browse Element(s) Details


Os.18675.1.S1_at

Description gb:CR290536
DB_XREF= gi:44677102
DB_XREF=CR290536
CLONE=y795f12p3
TID=Os.18675.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin (P0483G10.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7331011/11Actin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed
LOC_Os01g73310Os.18675.1.S1_at11/111+42810921..42814292Actin-1, putative, expressed
LOC_Os01g73320OsAffx.22848.4.S1_at2/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.3.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.4.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73332NANA1+42835336..42835962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73344Os.27691.2.S1_x_at1/111+42837861..42844028retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18675.1.S1_at--620--5831Chr01:42811644..42811668 (25 bp)
GACCTGTATGGCAACGTAGTGCTGA
LOC_Os01g73310
Os.18675.1.S1_at--704--6191Chr01:42811616..42811640 (25 bp)
GAGGCACAACAATGTTCCCTGGCAT
LOC_Os01g73310
Os.18675.1.S1_at--1009--8491Chr01:42811597..42811621 (25 bp)
TGGCATCGCCGACCGTATGAGCAAG
LOC_Os01g73310
Os.18675.1.S1_at--647--10811Chr01:42811532..42811556 (25 bp)
TTGTCGCTCCACCTGAACGCAAGTA
LOC_Os01g73310
Os.18675.1.S1_at--487--271Chr01:42811497..42811521 (25 bp)
ATAGGAGGGTCTATCCTGGCTTCTC
LOC_Os01g73310
Os.18675.1.S1_at--12--3111Chr01:42811190..42811214 (25 bp)
AATAGTTGCCTTTATGCAGCCATAA
LOC_Os01g73310
Os.18675.1.S1_at--808--4431Chr01:42811173..42811196 (24 bp)
GCCATAAACTGCCTGTGAATTGTAT
LOC_Os01g73310
Os.18675.1.S1_at--255--3771Chr01:42811143..42811167 (25 bp)
CTCTCTTATGTGGTTGGTTGCTCCA
LOC_Os01g73310
Os.18675.1.S1_at--1082--8871Chr01:42811083..42811107 (25 bp)
TGAGGTCACCTCTGGAACTTCTCTG
LOC_Os01g73310
Os.18675.1.S1_at--540--2511Chr01:42811068..42811092 (25 bp)
AACTTCTCTGGCTTGGTTGGTTGGA
LOC_Os01g73310
Os.18675.1.S1_at--775--9991Chr01:42811032..42811056 (25 bp)
TAGCTGATAGCCCTGGTGTTGTTTG
LOC_Os01g73310
Target Sequence 
GACCTGTATGGCAACGTAGTGCTGAGTGGAGGCACAACAATGTTCCCTGGCATCGCCGACCGTATGAGCAAGGAGATCAC
TGCCCTTGNCTCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCACCTGAACGCAAGTACAGTGTCTGGATAGGAGGGTCT
ATCCTGGCTTCTCTCAGCACCTTCCAGCAGATGTGGATATCGAAGGATGAGTATGATGAATCTGGCCCAGCAATTGTTCA
CAGGAAGTGCTTNTGAGTTTCTCATGCTGCCCTGTGNGTCGGTTTGTACTAGAGGAGAAATAGTTGCCTTTATGCAGCCA
TAAACTGCCTGTGAATTGTATGTCNCTCTCTTATGTGGTTGGTTGCTCCAGANNTCGTTGTACTATGTTNTTAGCTCTGT
GACTGTGAGGTCACCTCTGGAACTTCTCTGGCTTGGTTGGTTGGANGGAGTTGTGATAGCTGATAGCCCTGGTGTTGTTT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis