Browse Element(s) Details


Os.18891.1.S1_at

Description gb:AK071479.1
DB_XREF= gi:32981502
TID=Os.18891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093O16, full insert sequence.
FL= gb:AK071479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6035010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60310OsAffx.3655.1.S1_at11/113+34237482..34239065hypothetical protein
LOC_Os03g60340Os.35919.1.S1_s_at11/113+34250092..34253736expressed protein
LOC_Os03g60340Os.10095.1.S1_at11/113+34250092..34253736expressed protein
LOC_Os03g60350Os.18891.1.S1_at10/113+34259168..34264315expressed protein
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18891.1.S1_at--263--6991Chr03:34259995..34260019 (25 bp)
GTACCGCAAAGATGCTCACACTCAG
LOC_Os03g60350
Os.18891.1.S1_at--334--851Chr03:34259869..34259893 (25 bp)
ATGGAATGAGCTGCTCTACTCCAAG
LOC_Os03g60350
Os.18891.1.S1_at--624--211Chr03:34259809..34259833 (25 bp)
ATTTGAGTTTGGAGCACTGATCCCT
LOC_Os03g60350
Os.18891.1.S1_at--203--1971Chr03:34259794..34259818 (25 bp)
ACTGATCCCTATGTCTGAACTCTGA
LOC_Os03g60350
Os.18891.1.S1_at--353--5271Chr03:34259756..34259780 (25 bp)
GAATGCCACGTCCAAGTTGTGAGTA
LOC_Os03g60350
Os.18891.1.S1_at--488--6831Chr03:34259713..34259737 (25 bp)
GTTTCTGACCTTCTGGAGGAGAGTC
LOC_Os03g60350
Os.18891.1.S1_at--848--8051Chr03:34259696..34259720 (25 bp)
GGAGAGTCAGTCAGTCTAACATCAT
LOC_Os03g60350
Os.18891.1.S1_at--554--2651Chr03:34259579..34259603 (25 bp)
AAGCCACATGCTCATACTGTACTAA
LOC_Os03g60350
Os.18891.1.S1_at--532--6611NONE
GTTGGACATCAATATCGAGGCGACA
NONE
Os.18891.1.S1_at--282--5611Chr03:34259514..34259538 (25 bp)
GACAATATTCTTGCAGTCGCATGGA
LOC_Os03g60350
Os.18891.1.S1_at--1148--211Chr03:34259487..34259511 (25 bp)
ATATTATGTGGCCTTTCCGAGTTAA
LOC_Os03g60350
Target Sequence 
GTACCGCAAAGATGCTCACACTCAGATATACAAGAAGCAGTGGAACCCGCTAACCCCGGAGCAGATCGCGAACCCGAAGA
GCTACGCGGATTGCACGCATTGGTGCCTCCCAGGTCTCCAGGACACATGGAATGAGCTGCTCTACTCCAAGCTGTTCTTT
CCTTGAGCAAAAGAACAGTTTCTGATATTTGAGTTTGGAGCACTGATCCCTATGTCTGAACTCTGAAGAGAATTTTGCTG
AATGCCACGTCCAAGTTGTGAGTATATCAGATCACCTGGGGAGTTTCTGACCTTCTGGAGGAGAGTCAGTCAGTCTAACA
TCATATAGGTCCAAACATTCTGAAGATTACGATTGAATCATAAATATACAAGGAGCACTAGATGGAAATATCATGGAAAA
TGCTGAGCTCGTTGAAAAGCCACATGCTCATACTGTACTAATCACATGGCTGTTGATTTTGTTGGACATCAATATCGAGG
CGACAATATTCTTGCAGTCGCATGGAGAATATTATGTGGCCTTTCCGAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis