Browse Element(s) Details


Os.18923.2.S1_at

Description gb:AK065979.1
DB_XREF= gi:32975997
TID=Os.18923.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047J08, full insert sequence.
FL= gb:AK065979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3140011/11ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31380OsAffx.30109.1.S1_at11/119+18862285..18866497transcription factor jumonji, putative, expressed
LOC_Os09g31390Os.53810.1.S1_at11/119+18867479..18876573bZIP transcription factor family protein, expressed
LOC_Os09g31400Os.18923.2.S1_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.18923.1.S1_a_at11/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31400Os.19627.1.S1_a_at1/119+18881561..18885385ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os09g31410OsAffx.17976.1.S1_at11/119+18888723..18892801Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31420OsAffx.17977.1.S1_at11/119+18901783..18902564hypothetical protein
LOC_Os09g31430Os.11510.1.S1_s_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g31430Os.11510.1.S1_at11/119+18904347..18907425Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18923.2.S1_at--337--51Chr09:18882110..18882134 (25 bp)
ATTGAACATCAGTACCCAGGCTTGA
LOC_Os09g31400
Os.18923.2.S1_at--471--5611Chr09:18882075..18882099 (25 bp)
GACAAGTCTTTGTGCATTCCCTAAA
LOC_Os09g31400
Os.18923.2.S1_at--909--2031Chr09:18882023..18882047 (25 bp)
ACTATGATAGCTTGTCCTGCTGGAC
LOC_Os09g31400
Os.18923.2.S1_at--686--5251Chr09:18881965..18881989 (25 bp)
GAATCTGTTTGCAATCCTGCTTGCT
LOC_Os09g31400
Os.18923.2.S1_at--764--7451Chr09:18881879..18881903 (25 bp)
GTGTCTTCTGTAGTTCTCTTACCTA
LOC_Os09g31400
Os.18923.2.S1_at--599--8151Chr09:18881829..18881853 (25 bp)
GGAAATGTTCTGGTGCTTATGGCTA
LOC_Os09g31400
Os.18923.2.S1_at--801--1491Chr09:18881748..18881772 (25 bp)
AGCACAGTGCTGCATGTGGTTACAT
LOC_Os09g31400
Os.18923.2.S1_at--944--9531Chr09:18881693..18881717 (25 bp)
TCTATGGCTAGAGTTGGTCCTGAAC
LOC_Os09g31400
Os.18923.2.S1_at--709--7791Chr09:18881678..18881702 (25 bp)
GGTCCTGAACTGATGCTCTTATTAT
LOC_Os09g31400
Os.18923.2.S1_at--221--2351Chr09:18881619..18881643 (25 bp)
AAAGAACCTGTTCTGCCCAAATGCC
LOC_Os09g31400
Os.18923.2.S1_at--515--6771Chr09:18881579..18881603 (25 bp)
GTTACTAGGTTCTTGCAGCATTGAT
LOC_Os09g31400
Target Sequence 
ATTGAACATCAGTACCCAGGCTTGATGTGATGATAGACAAGTCTTTGTGCATTCCCTAAAAGAAAATAACCCTTAAATCT
GTATGATACTATGATAGCTTGTCCTGCTGGACATTTTGTATGACTGGTACATTTTCCAATTTGTAGAATCTGTTTGCAAT
CCTGCTTGCTTTTTTTTTAAAAAAAAAAAGAAGTCCAAGAAAGCGTTTATACGCTGAATAAGAGCCATGGAGTGTCTTCT
GTAGTTCTCTTACCTAAAAAACTAAAAACAACTAATGTTAAGGAAATGTTCTGGTGCTTATGGCTAAACACTGGGAAGCA
TAAGTTTTATCTTAATTTTATTAATACTAATAACTTCAGCTAAGCACAGTGCTGCATGTGGTTACATGATGTTTAATTGG
GCGAAGAAACCCATCAATCTATGGCTAGAGTTGGTCCTGAACTGATGCTCTTATTATGAAAGTATAATCTTTGAGTTTTG
ACTATTATATGAAAGAACCTGTTCTGCCCAAATGCCATGAGCATGTAGAATGTTACTAGGTTCTTGCAGCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18923.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis