Browse Element(s) Details


Os.18962.1.S1_at

Description gb:AK061689.1
DB_XREF= gi:32971707
TID=Os.18962.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B09, full insert sequence.
FL= gb:AK061689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g555209/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18962.1.S1_at--1025--4531Chr02:33987761..33987785 (25 bp)
GCCCAGGCTCCAGAATCTGTGGTTA
LOC_Os02g55520
Os.18962.1.S1_at--495--8171NONE
GGAACAGTGTCACATCTGCTTAACT
NONE
Os.18962.1.S1_at--505--10711Chr02:33986487..33986511 (25 bp)
TTGCTGTGTGTTGACAAGTGGCTCA
LOC_Os02g55520
Os.18962.1.S1_at--844--2831NONE
AAGTACACAGGGTCTGCCCGTTGTG
NONE
Os.18962.1.S1_at--231--2811Chr02:33985525..33985549 (25 bp)
AAGGTGCCGCCTGAAGACCTTTCAA
LOC_Os02g55520
Os.18962.1.S1_at--344--2491Chr02:33985502..33985526 (25 bp)
AACAGCAAGCATTGTCTTCGTCTCT
LOC_Os02g55520
Os.18962.1.S1_at--509--4571Chr02:33985457..33985481 (25 bp)
GCGCGAAGCAGCTGTGTTCATCCAG
LOC_Os02g55520
Os.18962.1.S1_at--111--1831Chr02:33985361..33985385 (25 bp)
ACGCGGTCGATTCCTTGCATTTAAT
LOC_Os02g55520
Os.18962.1.S1_at--836--5831Chr02:33985331..33985355 (25 bp)
GACCTGAACGATACTATACCGAGAC
LOC_Os02g55520
Os.18962.1.S1_at--1104--8751Chr02:33985292..33985316 (25 bp)
TGTAGTCGTCGAGTGAGCCTGCCTC
LOC_Os02g55520
Os.18962.1.S1_at--869--1191Chr02:33985223..33985247 (25 bp)
AGTTAATCCTCTGCTACCTGAAGAA
LOC_Os02g55520
Target Sequence 
GCCCAGGCTCCAGAATCTGTGGTTAATTCATTACCATGTAAGAGCTACAAAAAGCAGACAGCCCAATGCAGTGATGACAT
GGAACAGTGTCACATCTGCTTAACTGAATATGAGGATGGAGATCAGATAAGNAGCCTCCCGTGCNAACANGAGTTTCACT
TGCTGTGTGTTGACAAGTGGCTCAAAGAAGTACACAGGGTCTGCCCGTTGTGCCGTGGGGACGTGTGCGAAGGTGCCGCC
TGAAGACCTTTCAACAGCAAGCATTGTCTTCGTCTCTGCTCCACGGGCCCACGGCACGCGCGAAGCAGCTGTGTTCATCC
AGGCAATCGCCGATTGCCTTGCCCTTGCCGAAGCCGAAGAAGAGAGCCATACGATTCTGTTTCTGCCTGCTCCACGCGGT
CGATTCCTTGCATTTAATTTAACGACCTGAACGATACTATACCGAGACATGTATATACCTTTTGTAGTCGTCGAGTGAGC
CTGCCTCGCTCCTCTGTATTTCAGCCAGCTTGTACATATATGTAGATCCCCAGTTAATCCTCTGCTACCTGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis