Browse Element(s) Details


Os.18993.2.S1_x_at

Description gb:AK074023.1
DB_XREF= gi:32984046
TID=Os.18993.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075N18, full insert sequence.
FL= gb:AK074023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g011005/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18993.2.S1_x_at--148--372Chr02:51090..51114 (25 bp)
ATAATCATGCTTAGATCCTCCCTGG
LOC_Os02g01100
Os.18993.2.S1_x_at--409--851Chr02:50929..50953 (25 bp)
ATGGCGTTGGTTGGTTCTTTACTCA
LOC_Os02g01100
Os.18993.2.S1_x_at--1016--3871Chr02:50785..50809 (25 bp)
CTGTTTCTTGGCCATCCTTAAGAGA
LOC_Os02g01100
Os.18993.2.S1_x_at--1095--8271Chr02:50655..50774 (25 bp)
GGCATCAGATTGCAGCTTGCTCATT
LOC_Os02g01100
Os.18993.2.S1_x_at--218--4931Chr02:50641..50665 (25 bp)
GCTTGCTCATTCATCATCGTGGTAG
LOC_Os02g01100
Os.18993.2.S1_x_at--1020--2531Chr02:50563..50587 (25 bp)
AACTACACCTGACCTGAGTGGCCAG
NONE
Os.18993.2.S1_x_at--745--131Chr02:50494..50518 (25 bp)
ATTAATCATCCTTCTATAGCCCTGC
NONE
Os.18993.2.S1_x_at--340--4531Chr02:50476..50500 (25 bp)
GCCCTGCACATACCGGAACAAAGTT
NONE
Os.18993.2.S1_x_at--906--10371Chr02:50453..50477 (25 bp)
TTTTGCCCGGGAACTGGAGTCGACT
NONE
Os.18993.2.S1_x_at--692--5151Chr02:50374..50398 (25 bp)
GCAACTCCAGGCATGTTAATGTATA
NONE
Os.18993.2.S1_x_at--327--9831Chr02:50341..50365 (25 bp)
TAAAAACACCACAGTACCACATAGT
NONE
Target Sequence 
ATAATCATGCTTAGATCCTCCCTGGTGGTCTCAACCCTCCTCATTGCTCTATCTGTCCCCTTCTTTGGGCTAGTTATGGC
GTTGGTTGGTTCTTTACTCACCATGCTTGTGACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAG
TGACTTGGCATCAGATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCC
CTCTCCAAGATTATCCANAACTACACCTGACCTGAGTGGCCAGCTGAGGAACGGAGCACTAGCTGCTTATGTAGTAATAA
GAAAATAATTAATCATCCTTCTATAGCCCTGCACATACCGGAACAAAGTTTTGCCCGGGAACTGGAGTCGACTTGATCAA
TTATATATGTATAATATAATTAGTTTGGATCGTTTGTTTAATTTGTGGCAACTCCAGGCATGTTAATGTATAATTAACGA
TAAAAACACCACAGTACCACATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18993.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis