Browse Element(s) Details


Os.19003.1.S1_a_at

Description gb:AK067157.1
DB_XREF= gi:32977175
TID=Os.19003.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative branched chain alpha-keto acid dehydrogenase E2 subunit (B1011A07.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097E09, full insert sequence.
FL= gb:AK067157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2116011/112-oxo acid dehydrogenases acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21170Os.45735.1.A1_at3/111+11794211..11794432hypothetical protein
LOC_Os01g21180Os.18476.1.S1_at11/111+11794660..11798266MLL, putative, expressed
LOC_Os01g21190Os.14919.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21190OsAffx.29313.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21200OsAffx.23000.1.S1_at4/111+11807643..11808585hypothetical protein
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0003826molecular_functionalpha-ketoacid dehydrogenase activity
GO:0004147molecular_functiondihydrolipoamide branched chain acyltransferase activity
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19003.1.S1_a_at--371--3171Chr01:11787282..11787306 (25 bp)
AATTGTCACGTCTACATGAGATGGC
LOC_Os01g21160
Os.19003.1.S1_a_at--329--6031Chr01:11787265..11787289 (25 bp)
GAGATGGCATCGCACAACAGGCTGA
LOC_Os01g21160
Os.19003.1.S1_a_at--21--2011Chr01:11787209..11787233 (25 bp)
ACTAAGCAACATAGGCGCCATTGGT
LOC_Os01g21160
Os.19003.1.S1_a_at--817--31Chr01:11787190..11787214 (25 bp)
ATTGGTGGCAAGTTTGGCTCTCCGC
LOC_Os01g21160
Os.19003.1.S1_a_at--95--2071Chr01:11787159..11787183 (25 bp)
ACTTGCCTGAAGTTGCCATTATTGC
LOC_Os01g21160
Os.19003.1.S1_a_at--138--3591Chr01:11787143..11787167 (25 bp)
CATTATTGCACTCGGACGCATTCAA
LOC_Os01g21160
Os.19003.1.S1_a_at--880--2391Chr01:11787118..11787142 (25 bp)
AAACTTCCTCGCTTTGATGATGATG
LOC_Os01g21160
Os.19003.1.S1_a_at--1064--5511Chr01:11787094..11787118 (25 bp)
GAAAATGTTTATCCTTCCTCAATAA
LOC_Os01g21160
Os.19003.1.S1_a_at--523--5731Chr01:11786969..11786993 (25 bp)
GACTGTTGGAGCTGATCACCGAGTT
LOC_Os01g21160
Os.19003.1.S1_a_at--938--8831Chr01:11786957..11786981 (25 bp)
TGATCACCGAGTTGTTGACGGCGCC
LOC_Os01g21160
Os.19003.1.S1_a_at--874--4231Chr01:11786931..11786955 (25 bp)
CCGTTGCAAGGTTCTGTAATGAGTG
LOC_Os01g21160
Target Sequence 
AATTGTCACGTCTACATGAGATGGCATCGCACAACAGGCTGAGCACAGAAGATATTGCTGGTGGAACCATAACACTAAGC
AACATAGGCGCCATTGGTGGCAAGTTTGGCTCTCCGCTTCTCAACTTGCCTGAAGTTGCCATTATTGCACTCGGACGCAT
TCAAAAACTTCCTCGCTTTGATGATGATGAAAATGTTTATCCTTCCTCAATAATCAATGTGACTGTTGGAGCTGATCACC
GAGTTGTTGACGGCGCCNCCGTTGCAAGGTTCTGTAATGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19003.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis