Browse Element(s) Details


Os.19016.1.S1_at

Description gb:AK102791.1
DB_XREF= gi:32988000
TID=Os.19016.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) leaf senescence related protein-like (P0004D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107P14, full insert sequence.
FL= gb:AK102791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6863011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19016.1.S1_at--1016--6251Chr01:40187557..40187581 (25 bp)
GATGGGCATCCTGGTCCATATAGAA
LOC_Os01g68630
Os.19016.1.S1_at--858--1311Chr01:40187616..40187640 (25 bp)
AGATGGAAGGCCTCCACCTCAGGAT
LOC_Os01g68630
Os.19016.1.S1_at--745--3751Chr01:40187633..40187657 (25 bp)
CTCAGGATTGCCTACATTGGTGCAT
LOC_Os01g68630
Os.19016.1.S1_at--796--31Chr01:40187648..40187672 (25 bp)
ATTGGTGCATGCCAGGACCTGTAGA
LOC_Os01g68630
Os.19016.1.S1_at--635--2471Chr01:40187739..40187763 (25 bp)
AACACTCATTGGCTGCTTGATTTCT
LOC_Os01g68630
Os.19016.1.S1_at--660--6931Chr01:40187769..40187793 (25 bp)
GTGATACGACCTGCAAAAACTAATT
LOC_Os01g68630
Os.19016.1.S1_at--195--2711Chr01:40187794..40187818 (25 bp)
AAGCTTCTAGCATTGGTGTATACCT
LOC_Os01g68630
Os.19016.1.S1_at--750--251Chr01:40187825..40187849 (25 bp)
ATATCGTGTTGTTGTTCTCCCACAG
LOC_Os01g68630
Os.19016.1.S1_at--1117--6891Chr01:40187984..40188008 (25 bp)
GTATCTAGTTTTTTGTCTGACACAT
LOC_Os01g68630
Os.19016.1.S1_at--1075--711Chr01:40188051..40188075 (25 bp)
ATGATCTCATATCTCGAGCACCTGT
LOC_Os01g68630
Os.19016.1.S1_at--838--5931Chr01:40188066..40188090 (25 bp)
GAGCACCTGTCAATCTATGAGGCAG
LOC_Os01g68630
Target Sequence 
GATGGGCATCCTGGTCCATATAGAAGTACTGACCCAAACAAGAAGACGCAAAGAGGTCCAGATGGAAGGCCTCCACCTCA
GGATTGCCTACATTGGTGCATGCCAGGACCTGTAGATACATGGAATGAGATGTTGCTAGAGACCATACGAAGAGAGTTCG
AGGGAGTGAGAAGCTGAAGAAAAACACTCATTGGCTGCTTGATTTCTNTCATGTGATACGACCTGCAAAAACTAATTAAG
CTTCTAGCATTGGTGTATACCTCATTACATATCGTGTTGTTGTTCTCCCACAGATAGGAAGGAAATATAGCTTTTGGTTG
GACAAAAAAACAAATTGTAGGCATGTTGTCAACAGTCGGGATAGAAGTACANAGGGGTAGACAGTTAGAGAGAGAGGTTA
TGATGGATGATACTGTGCAATTGATCTGTATCTAGTTTTTTGTCTGACACATTCTTGGAGATATGATCCGTTGACGAATT
TTGTGGAACTACATATGATCTCATATCTCGAGCACCTGTCAATCTATGAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis