Browse Element(s) Details


Os.19086.3.S1_x_at

Description gb:NM_189952.1
DB_XREF= gi:34906987
GEN=P0413C03.17
TID=Os.19086.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19086 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger protein (P0413C03.17), mRNA.
PROD=putative zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g688607/11Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68880NANA1+40355323..40355577hypothetical protein
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19086.3.S1_x_at--849--591Chr01:40334531..40334555 (25 bp)
ATGCCTGTTTCATCTTCTGAGAGTC
LOC_Os01g68860
Os.19086.3.S1_x_at--328--8211Chr01:40334435..40334459 (25 bp)
GGAATGTTGTCACCCTACAGATCTA
LOC_Os01g68860
Os.19086.3.S1_x_at--146--451Chr01:40334415..40334439 (25 bp)
ATCTAGTTCATATCCTGTACCTCAA
LOC_Os01g68860
Os.19086.3.S1_x_at--681--591Chr01:40334264..40334288 (25 bp)
ATGCCTACTCCAGATTGTGTCTTGA
LOC_Os01g68860
Os.19086.3.S1_x_at--441--7351Chr01:40333724..40333748 (25 bp)
GTGCAAGTTCTATTCTCGCTATGGC
LOC_Os01g68860
Os.19086.3.S1_x_at--998--851Chr01:40333704..40333728 (25 bp)
ATGGCATCTGCAAGTTCGGCGCGAA
LOC_Os01g68860
Os.19086.3.S1_x_at--771--3711Chr01:40333631..40333655 (25 bp)
CTACGGCTCTGCTTCAACTAATGTA
LOC_Os01g68860
Os.19086.3.S1_x_at--205--1751NONE
ACCTATGATTGTCGGTATCGGCTTT
NONE
Os.19086.3.S1_x_at--1043--10111Chr01:40331119..40331143 (25 bp)
TATCGGCTTTAGTGGATCTTGGCAG
NONE
Os.19086.3.S1_x_at--1040--2911Chr01:40331093..40331117 (25 bp)
AAGGAGCCAAGGACCCGACAGATTC
NONE
Os.19086.3.S1_x_at--687--7571Chr01:40331063..40331087 (25 bp)
GGGCTCCACCAAACACACATGTACT
NONE
Target Sequence 
ATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGGCTCAACAAACCTATGGAACTTCTCAGCAAGTTGATGC
CAGTGCAGGCAATCAGGGAATGTTGTCACCCTACAGATCTAGTTCATATCCTGTACCTCAATACGCATTGCAGAGAGAGA
ATGTATTTCCTGAGAGACCTGATCAACCAGAATGTCAATACTACATGAAGACTGGAGACTGTAAATTTGGTGCGGTGTGC
AAGTTCCATCATCCCCGGGTGCGATCAATGCCTACTCCAGATTGTGTCTTGAGTCCAGTGGGTCTTCCACTACGTCCGGG
AGAAGAACTGTGCAAGTTCTATTCTCGCTATGGCATCTGCAAGTTCGGCGCGAATTGCAAATTTGACCATCCAACGATGG
CTCCTCCAATGGGAGTGTATGCCTACGGCTCTGCTTCAACTAATGTACCTATGATTGTCGGTATCGGCTTTAGTGGATCT
TGGCAGCAAGGAGCCAAGGACCCGACAGATTCCTCCGGGGCTCCACCAAACACACATGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19086.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis