Browse Element(s) Details


Os.19102.1.S1_at

Description gb:BM418703
DB_XREF= gi:18385504
DB_XREF=R003F07
CLONE=R003F07
TID=Os.19102.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19102 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g249103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24850Os.52594.1.S1_at1/116+14578529..14579060AUX/IAA family protein
LOC_Os06g24860OsAffx.21280.1.S1_s_at11/116+14580910..14582306hypothetical protein
LOC_Os06g24860OsAffx.29868.2.S1_at1/116+14580910..14582306hypothetical protein
LOC_Os06g24870Os.15478.1.S1_x_at6/116+14583495..14589176Bromodomain containing protein, expressed
LOC_Os06g24870Os.15478.1.S1_at2/116+14583495..14589176Bromodomain containing protein, expressed
LOC_Os06g24880NANA6+14588809..14589860hypothetical protein
LOC_Os06g24890OsAffx.4931.1.S1_at11/116+14597471..14598720hypothetical protein
LOC_Os06g24900OsAffx.27814.1.S1_at9/116+14599887..14600672hypothetical protein
LOC_Os06g24910Os.54290.1.S1_at11/116+14601719..14604946expressed protein
LOC_Os06g24910Os.19102.1.S1_at3/116+14601719..14604946expressed protein
LOC_Os06g24920OsAffx.16782.1.S1_at9/116+14605173..14607146hypothetical protein
LOC_Os06g24930NANA6+14615411..14616280transposon protein, putative, Ac/Ds sub-class, expressed
LOC_Os06g24950OsAffx.22385.1.S1_x_at3/116+14620186..14621253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24960NANA6+14621848..14624451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24970NANA6+14624801..14625994hypothetical protein
LOC_Os06g24980OsAffx.8455.1.S1_at8/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24980OsAffx.8589.1.S1_at1/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19102.1.S1_at--536--1472Chr08:11395311..11395335 (25 bp)
AGAATGCCCTCTTGATGTTTTGATA
NONE
Os.19102.1.S1_at--810--4172Chr10:8233888..8233933 (25 bp)
CCCATACGCATGTGTGGCTGTGCAA
NONE
Os.19102.1.S1_at--572--3011Chr08:11395221..11395245 (25 bp)
AATGCAGCCTGCGATGGAGTGCCAC
NONE
Os.19102.1.S1_at--245--2591Chr08:11395196..11395220 (25 bp)
AACGAGCTCCGCTAAGTTACTTTGC
NONE
Os.19102.1.S1_at--363--2831Chr08:11395183..11395207 (25 bp)
AAGTTACTTTGCTAGGCCATCCTTG
NONE
Os.19102.1.S1_at--767--3591Chr08:11395149..11395173 (25 bp)
CTTGGCGCGGCCAGGGATTCCAGCA
NONE
Os.19102.1.S1_at--829--6573Chr10:8232324..8232347 (24 bp)
GATTCTACAGTATTTCCTAACCATG
NONE
Os.19102.1.S1_at--748--6271Chr08:11393596..11393620 (25 bp)
GATGTCATACTGACTCTCAAGTCGA
NONE
Os.19102.1.S1_at--745--2852Chr08:11393578..11393602 (25 bp)
AAGTCGATTTTGACACATCTTGAAT
NONE
Os.19102.1.S1_at--562--171Chr08:11393528..11393552 (25 bp)
ATTTTTACCTTTCTGCTTTGTCATG
NONE
Os.19102.1.S1_at--659--6511Chr08:11393469..11393493 (25 bp)
GATATCTCTGTTCTTCAGCAAAGCG
NONE
Target Sequence 
AGAATGCCCTCTTGATGTTTTGATATGGAGGAGTTTTCAGACGGAGAAGAACAAGCTGCTTGGCAGCCCATACGCATGTG
TGGCTGTGCAAATGCAGCCTGCGATGGAGTGCCACAACGAGCTCCGCTAAGTTACTTTGCTAGGCCATCCTTGCGATGGC
AGCTTGGCGCGGCCAGGGATTCCAGCAGCCCATGGTGGTGTTCAAAATGAGCAGATGGTTCATCTCTACCACTTGCAGTC
TGATTCTACAGTATTTCCTAACCATGGCTATGAATGTTTTTTTATGAAGAAAAAATCCCATGTCAAACATACCTCAAATC
TCAAGTTACATATGACCAGTGTTGATGTCATACTGACTCTCAAGTCGATTTTGACACATCTTGAATTGAACCAATCCAAA
CAAATAGATTTATTTTTACCTTTCTGCTTTGTCATGATTTGGNTCGACATATTCAGTCCAGATATTACAGTGATATCTCT
GTTCTTCAGCAAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis