Browse Element(s) Details

Os.54290.1.S1_at

Description

gb:AK103091.1
DB_XREF= gi:32988300
TID=Os.54290.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118J09, full insert sequence.
FL= gb:AK103091.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g24910	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g24850	Os.52594.1.S1_at	1/11	6	+	14578529..14579060	AUX/IAA family protein
LOC_Os06g24860	OsAffx.21280.1.S1_s_at	11/11	6	+	14580910..14582306	hypothetical protein
LOC_Os06g24860	OsAffx.29868.2.S1_at	1/11	6	+	14580910..14582306	hypothetical protein
LOC_Os06g24870	Os.15478.1.S1_x_at	6/11	6	+	14583495..14589176	Bromodomain containing protein, expressed
LOC_Os06g24870	Os.15478.1.S1_at	2/11	6	+	14583495..14589176	Bromodomain containing protein, expressed
LOC_Os06g24880	NA	NA	6	+	14588809..14589860	hypothetical protein
LOC_Os06g24890	OsAffx.4931.1.S1_at	11/11	6	+	14597471..14598720	hypothetical protein
LOC_Os06g24900	OsAffx.27814.1.S1_at	9/11	6	+	14599887..14600672	hypothetical protein
LOC_Os06g24910	Os.54290.1.S1_at	11/11	6	+	14601719..14604946	expressed protein
LOC_Os06g24910	Os.19102.1.S1_at	3/11	6	+	14601719..14604946	expressed protein
LOC_Os06g24920	OsAffx.16782.1.S1_at	9/11	6	+	14605173..14607146	hypothetical protein
LOC_Os06g24930	NA	NA	6	+	14615411..14616280	transposon protein, putative, Ac/Ds sub-class, expressed
LOC_Os06g24950	OsAffx.22385.1.S1_x_at	3/11	6	+	14620186..14621253	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24960	NA	NA	6	+	14621848..14624451	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24970	NA	NA	6	+	14624801..14625994	hypothetical protein
LOC_Os06g24980	OsAffx.8455.1.S1_at	8/11	6	+	14629292..14638773	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24980	OsAffx.8589.1.S1_at	1/11	6	+	14629292..14638773	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54290.1.S1_at--523--493	1	Chr06:14604023..14604047 (25 bp)	GCTTGGATCTTATTTCTACCAGATG	LOC_Os06g24910
Os.54290.1.S1_at--886--527	1	Chr06:14603703..14603727 (25 bp)	GAATGAGCTACTTAGGAGCCCATAC	LOC_Os06g24910
Os.54290.1.S1_at--852--31	2	Chr10:8233906..8233930 (25 bp)	ATACGAATGTGCTGTTCTCCAAGAG	NONE
Os.54290.1.S1_at--242--229	1	Chr06:14603644..14603668 (25 bp)	AAATGCAGCCTTCGACAGAGTGCCC	LOC_Os06g24910
Os.54290.1.S1_at--406--611	1	Chr06:14603627..14603651 (25 bp)	GAGTGCCCACAGCAAGCTCTGTTAA	LOC_Os06g24910
Os.54290.1.S1_at--841--877	1	Chr06:14603608..14603632 (25 bp)	TGTTAAACTGCTTTGCTTGGCCATC	LOC_Os06g24910
Os.54290.1.S1_at--826--907	1	Chr06:14603575..14603599 (25 bp)	TGCTACCAGCCCATGTATACGATGG	LOC_Os06g24910
Os.54290.1.S1_at--482--117	1	Chr06:14603514..14603538 (25 bp)	AGTACATCTTATTTCACTCCACATG	LOC_Os06g24910
Os.54290.1.S1_at--311--1051	1	Chr06:14603463..14603487 (25 bp)	TTCAAGGTCGCTTGCCTACATCAAA	LOC_Os06g24910
Os.54290.1.S1_at--1114--315	1	Chr06:14601863..14601887 (25 bp)	AATTGGTGGGCATCTGGACTCCAGA	LOC_Os06g24910
Os.54290.1.S1_at--736--883	1	Chr06:14601830..14601854 (25 bp)	TGATATCTCCGTGTTCTTCCGCGAA	LOC_Os06g24910

Target Sequence

GCTTGGATCTTATTTCTACCAGATGCAGTTGGAGTTAGCACATATATCTTAATCCACTCAGGAAACTTCTCCCAACCCTG
TTTACAGATGGAGAAGAATGAGCTACTTAGGAGCCCATACGAATGTGCTGTTCTCCAAGAGGCATGTGTGGCGCAAATGC
AGCCTTCGACAGAGTGCCCACAGCAAGCTCTGTTAAACTGCTTTGCTTGGCCATCCATCCGATTGCTACCAGCCCATGTA
TACGATGGAGTATTTCACATGATAACAAGCTATATTATTATCTCAGTACATCTTATTTCACTCCACATGATTATTAAATG
TTTAGCTTCTATATATTCAAGGTCGCTTGCCTACATCAAACCTTTGATTCAAGGTGGTGTTCAAAATCAGCAGATGGTTC
ATCTCTACTACTTGCAGTCTGATTCTACAGAATTGGTGGGCATCTGGACTCCAGATATTACACTGATATCTCCGTGTTCT
TCCGCGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis