Browse Element(s) Details


Os.19299.1.S1_at

Description gb:AK103214.1
DB_XREF= gi:32988423
TID=Os.19299.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122M20, full insert sequence.
FL= gb:AK103214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5968010/11PAPA-1-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed
LOC_Os03g59710Os.6036.1.S1_s_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59710Os.5336.1.S1_at11/113+33937742..33938580Pre-mRNA branch site p14, putative, expressed
LOC_Os03g59720Os.27962.1.A1_at11/113+33939999..33941322ribosomal protein L36 containing protein, expressed
LOC_Os03g59730OsAffx.25773.1.S1_at10/113+33941973..33944596No apical meristem protein
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19299.1.S1_at--373--191Chr03:33927812..33927836 (25 bp)
ATTTCCTGATAAGATGGGCCTCCCT
LOC_Os03g59680
Os.19299.1.S1_at--988--791Chr03:33927799..33927823 (25 bp)
ATGGGCCTCCCTAGCATATTTGACT
LOC_Os03g59680
Os.19299.1.S1_at--886--231NONE
ATATTTGACTCCAAGCCTATCAGCT
NONE
Os.19299.1.S1_at--1097--5971Chr03:33927613..33927637 (25 bp)
GAGAAATGTGCAGGCCCTTCATGCA
LOC_Os03g59680
Os.19299.1.S1_at--111--5031Chr03:33927536..33927560 (25 bp)
GCAGTGCTACAAGGCTGTCCAGGGA
LOC_Os03g59680
Os.19299.1.S1_at--861--9111Chr03:33927383..33927407 (25 bp)
TGCTGCTTGTTCTTGTGTTGCCAAT
LOC_Os03g59680
Os.19299.1.S1_at--1079--3171Chr03:33927362..33927386 (25 bp)
CAATGTTACCTTTTGCCAGTCCTAA
LOC_Os03g59680
Os.19299.1.S1_at--336--8431Chr03:33927299..33927323 (25 bp)
GGCCATCCTTTTGACTCGTTGTGGA
LOC_Os03g59680
Os.19299.1.S1_at--188--651Chr03:33927275..33927299 (25 bp)
ATGCAGCTGCAGTGTTCTCGATTAA
LOC_Os03g59680
Os.19299.1.S1_at--571--8751Chr03:33927200..33927224 (25 bp)
TGTACAGTGATCATCCTACTCGTCA
LOC_Os03g59680
Os.19299.1.S1_at--677--5512Chr08:18800814..18800856 (24 bp)
GAAAATTGTCTCTCTGTTTGCACTT
NONE
Target Sequence 
ATTTCCTGATAAGATGGGCCTCCCTAGCATATTTGACTCCAAGCCTATCAGCTATCCACCTCCAAGGGAGAAATGTGCAG
GCCCTTCATGCACAAATCCATACAAGTACCGGGACTCNAAGACGAAGCTTCCGCTCTGCAGCCTGCAGTGCTACAAGGCT
GTCCAGGGAAGCTCTGAGGCTGCCCAGGGAAGCTCTGAGACGCTAACATGCTGATCTCAGAAATTAAAGGATGGTGGTGA
GGCAATCGTGACTGTTTTGTGGAACTGGAGAATTGTGCTAGTTCCATTTGCCACCTTTGCTGCTTGTTCTTGTGTTGCCA
ATGTTACCTTTTGCCAGTCCTAACAATCAACCANCCAACAGAGGGGGTGTCGCCTGCTGCTGGCCATCCTTTTGACTCGT
TGTGGATGCAGCTGCAGTGTTCTCGATTAAGGATTAATTTAGGTGGTAGTCAGATGAATGAGAGTGATGTATACATTAGT
TGTACAGTGATCATCCTACTCGTCATCGTTGGTCATGAAATCATCTTGAAAATTGTCTCTCTGTTTGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis