Browse Element(s) Details


Os.19315.1.S1_s_at

Description gb:BM420799
DB_XREF= gi:18387601
DB_XREF=U019B12
CLONE=U019B12
TID=Os.19315.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19315 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51373 (A.thaliana) T51373 hypothetical protein F1N13_40 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g496503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19315.1.S1_s_at--246--3651Chr02:30338488..30338512 (25 bp)
CTTCGTTGTGGATTGCCTGCATTGG
LOC_Os02g49650
Os.19315.1.S1_s_at--313--7551Chr02:30338522..30338546 (25 bp)
GGGCCGATTGACCTGTGGAGCGAGC
LOC_Os02g49650
Os.19315.1.S1_s_at--900--8531Chr02:30338537..30338561 (25 bp)
TGGAGCGAGCTGCTGTTCCACATGC
LOC_Os02g49650
Os.19315.1.S1_s_at--823--9111Chr02:30338559..30338583 (25 bp)
TGCTGGTTGATCAATAGTACTAGTA
NONE
Os.19315.1.S1_s_at--792--1171Chr02:30338574..30338598 (25 bp)
AGTACTAGTATATACTCGTTCAAGT
NONE
Os.19315.1.S1_s_at--463--3771Chr02:30338588..30338612 (25 bp)
CTCGTTCAAGTAGATCATGAGTTCA
NONE
Os.19315.1.S1_s_at--200--9631Chr02:30338602..30338626 (25 bp)
TCATGAGTTCAATTGCTCTACCAAA
NONE
Os.19315.1.S1_s_at--512--9011Chr02:30338650..30338674 (25 bp)
TGCAATTGGTGCATTATACCTGGAA
NONE
Os.19315.1.S1_s_at--615--4951Chr02:30338660..30338684 (25 bp)
GCATTATACCTGGAAGATCATTTAT
NONE
Os.19315.1.S1_s_at--1090--4251Chr02:30338668..30338692 (25 bp)
CCTGGAAGATCATTTATGTGAAATC
NONE
Os.19315.1.S1_s_at--456--2271Chr02:30338688..30338712 (25 bp)
AAATCTGGAAAACTGTACTGTTCTG
NONE
Target Sequence 
CTTCGTTGTGGATTGCCTGCATTGGTGCTTGCCGGGGCCGATTGACCTGTGGAGCGAGCTGCTGTTCCACATGCTGGTTG
ATCAATAGTACTAGTATATACTCGTTCAAGTAGATCATGAGTTCAATTGCTCTACCAAATTTCAAAGTGCTGCTTGTGGA
ATGCAATTGGTGCATTATACCTGGAAGATCATTTATGTGAAATCTGGAAAACTGTACTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19315.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis