Browse Element(s) Details


Os.19414.1.S1_a_at

Description gb:AK102006.1
DB_XREF= gi:32987215
TID=Os.19414.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079N19, full insert sequence.
FL= gb:AK102006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5345011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed
LOC_Os02g53440OsAffx.24852.1.S1_at11/112+32693011..32694182expressed protein
LOC_Os02g53450Os.19414.1.S1_a_at11/112+32694564..32698762expressed protein
LOC_Os02g53450Os.20829.1.S1_at1/112+32694564..32698762expressed protein
LOC_Os02g53470NANA2+32705140..32709525retrotransposon protein, putative, unclassified
LOC_Os02g53480OsAffx.12625.1.S1_at11/112+32711190..32712443hypothetical protein
LOC_Os02g53490Os.18637.1.S1_at11/112+32715133..32717511Metal tolerance protein C3, putative, expressed
LOC_Os02g53500Os.2212.1.S1_at11/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500Os.51090.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53500OsAffx.30917.1.S1_at1/112+32717469..32721689Activator 1 36 kDa subunit, putative, expressed
LOC_Os02g53510Os.57181.1.S1_at11/112+32722558..32723477expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19414.1.S1_a_at--82--1651Chr02:32698410..32698434 (25 bp)
AGCGACGCGGACGACGAAGACGCAC
LOC_Os02g53450
Os.19414.1.S1_a_at--7--1871Chr02:32698420..32698444 (25 bp)
ACGACGAAGACGCACCTCAGGTGGA
LOC_Os02g53450
Os.19414.1.S1_a_at--702--9631Chr02:32698436..32698460 (25 bp)
TCAGGTGGAGATCCGCGTCCTCGTC
LOC_Os02g53450
Os.19414.1.S1_a_at--1110--9391Chr02:32698456..32698480 (25 bp)
TCGTCGTCCAGCAGGTACCGAGGCG
LOC_Os02g53450
Os.19414.1.S1_a_at--954--911Chr02:32698503..32698527 (25 bp)
AGGCTCGGGCTCAGCAGTGGTCCTC
LOC_Os02g53450
Os.19414.1.S1_a_at--312--511Chr02:32698542..32698566 (25 bp)
ATCGTCCAGTGCGTCCAAGATGTAT
LOC_Os02g53450
Os.19414.1.S1_a_at--165--7271Chr02:32698554..32698578 (25 bp)
GTCCAAGATGTATCCGCGCGGGTCG
LOC_Os02g53450
Os.19414.1.S1_a_at--353--2271Chr02:32698599..32698623 (25 bp)
AAATCCACATTCACATTGTCACGGA
LOC_Os02g53450
Os.19414.1.S1_a_at--127--3611Chr02:32698612..32698636 (25 bp)
CATTGTCACGGAGTACTAGCTAGTA
LOC_Os02g53450
Os.19414.1.S1_a_at--712--2091Chr02:32698682..32698706 (25 bp)
ACATCATCTCGGCTAATTGAGTTGT
LOC_Os02g53450
Os.19414.1.S1_a_at--395--3771Chr02:32698689..32698713 (25 bp)
CTCGGCTAATTGAGTTGTTTACTGA
LOC_Os02g53450
Target Sequence 
AGCGACGCGGACGACGAAGACGCACCTCAGGTGGAGATCCGCGTCCTCGTCGTCCAGCAGGTACCGAGGCGGCACGAGCG
ACCGGAGGAGCCCAGGCTCGGGCTCAGCAGTGGTCCTCCGCCTCTCCGCCTCATCGTCCAGTGCGTCCAAGATGTATCCG
CGCGGGTCGCCGCGTCCGCTCGCCTGNACAAATCCACATTCACATTGTCACGGAGTACTAGCTAGTAGTAGTAGTAGTAG
TAATTAGTTCACNAAATGTAACTAGCCTGGCAACATCATCTCGGCTAATTGAGTTGTTTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19414.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis