Browse Element(s) Details


Os.19476.1.S1_at

Description gb:AK100694.1
DB_XREF= gi:32985903
TID=Os.19476.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114I18, full insert sequence.
FL= gb:AK066392.1 gb:AK100694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1588011/11Coronatine-insensitive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0009625biological_processresponse to insect
GO:0009733biological_processresponse to auxin stimulus
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19476.1.S1_at--806--2731Chr03:8745387..8745411 (25 bp)
AAGATGAAGTTTGCCCGGACGGTCA
LOC_Os03g15880
Os.19476.1.S1_at--1054--6031Chr03:8745448..8745472 (25 bp)
GAGATCAGATTACCCTCACTCAGTA
LOC_Os03g15880
Os.19476.1.S1_at--143--3771Chr03:8745479..8745503 (25 bp)
CTCTATCCTTCGGTTTGAGTGTATA
LOC_Os03g15880
Os.19476.1.S1_at--981--7891Chr03:8745516..8745540 (25 bp)
GGTTGCGAAACTCACACTCTAGTAT
LOC_Os03g15880
Os.19476.1.S1_at--1116--8411Chr03:8745542..8745566 (25 bp)
GGCCGATATTGTTCCAAATTCTACA
LOC_Os03g15880
Os.19476.1.S1_at--257--7691Chr03:8745691..8745715 (25 bp)
GGGTATCACTTCTGCGAAAGCTCAG
LOC_Os03g15880
Os.19476.1.S1_at--675--5711Chr03:8745818..8745842 (25 bp)
GACTCTTTAGCTTTGTGTCACATTG
LOC_Os03g15880
Os.19476.1.S1_at--43--3611Chr03:8745838..8745862 (25 bp)
CATTGTCTCTTGGAAGATCGCCGCA
LOC_Os03g15880
Os.19476.1.S1_at--488--1291Chr03:8745852..8745876 (25 bp)
AGATCGCCGCACTGTGTTCTAATAA
LOC_Os03g15880
Os.19476.1.S1_at--288--6731Chr03:8745867..8745891 (25 bp)
GTTCTAATAAGTCATTCGCTGTACA
LOC_Os03g15880
Os.19476.1.S1_at--657--1951Chr03:8745919..8745943 (25 bp)
ACTGGCTGTATTCTTGCTGTGACTT
LOC_Os03g15880
Target Sequence 
AAGATGAAGTTTGCCCGGACGGTCAGGCACAGATTCTTGCATATTACTCACTTGCAGGAATGAGATCAGATTACCCTCAC
TCAGTAATTCCCCTCTATCCTTCGGTTTGAGTGTATATGTCTGATACCAGGTTGCGAAACTCACACTCTAGTATAGGCCG
ATATTGTTCCAAATTCTACAGTTTGCTGCTCTTATTCTGTTTAGCAATGAGCACAGAACAAATGACAAATAAAAGCAGGA
TAGCTGTTAGTTCGAGGAACATATTATAACATCTTGGGACTAAGAATTTTATTGCATATCTGAGGGGTATCACTTCTGCG
AAAGCTCAGCTCAATTGGCCAGCACGGATATGTAAACTTCTCCNTTTTGATTAGGATCGGNNACACAATTTTGTAATAAT
GTTCCTTGTTCAATGTTTAGTAGTATTATTTGACTCTTTAGCTTTGTGTCACATTGTCTCTTGGAAGATCGCCGCACTGT
GTTCTAATAAGTCATTCGCTGTACAATATTTTTATCATCCACAGANCACACTACTGGCTGTATTCTTGCTGTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis