Browse Element(s) Details


Os.19519.1.S1_s_at

Description gb:BM421682
DB_XREF= gi:18388470
DB_XREF=V018A09
CLONE=V018A09
TID=Os.19519.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19519 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3257011/115'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0019379biological_processsulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)
GO:0019421biological_processsulfate reduction, APS pathway
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004604molecular_functionphosphoadenylyl-sulfate reductase (thioredoxin) activity
GO:0009973molecular_functionadenylyl-sulfate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19519.1.S1_s_at--923--8831Chr07:19408500..19408524 (25 bp)
TGATCCGGTGTATTAGTATTAGGGT
LOC_Os07g32570
Os.19519.1.S1_s_at--957--9271Chr07:19408497..19408521 (25 bp)
TCCGGTGTATTAGTATTAGGGTGAG
LOC_Os07g32570
Os.19519.1.S1_s_at--109--131Chr07:19408489..19408513 (25 bp)
ATTAGTATTAGGGTGAGATGGGTTA
LOC_Os07g32570
Os.19519.1.S1_s_at--299--9091Chr07:19408388..19408412 (25 bp)
TGCTACTGCGGGTTAATCCTGGAAA
LOC_Os07g32570
Os.19519.1.S1_s_at--1053--9911Chr07:19408385..19408409 (25 bp)
TACTGCGGGTTAATCCTGGAAAGCT
LOC_Os07g32570
Os.19519.1.S1_s_at--471--4491Chr07:19408381..19408405 (25 bp)
GCGGGTTAATCCTGGAAAGCTTCTC
LOC_Os07g32570
Os.19519.1.S1_s_at--65--6771Chr07:19408377..19408401 (25 bp)
GTTAATCCTGGAAAGCTTCTCTTCT
LOC_Os07g32570
Os.19519.1.S1_s_at--14--9771Chr07:19408375..19408399 (25 bp)
TAATCCTGGAAAGCTTCTCTTCTTT
LOC_Os07g32570
Os.19519.1.S1_s_at--963--551Chr07:19408373..19408397 (25 bp)
ATCCTGGAAAGCTTCTCTTCTTTCG
LOC_Os07g32570
Os.19519.1.S1_s_at--206--8531Chr07:19408369..19408393 (25 bp)
TGGAAAGCTTCTCTTCTTTCGGAGG
LOC_Os07g32570
Os.19519.1.S1_s_at--153--9531Chr07:19408358..19408382 (25 bp)
TCTTCTTTCGGAGGAAGAGGGTAAT
LOC_Os07g32570
Target Sequence 
TGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGTTCAGAGGAAGGGTCAGGGATCCAGGG
TTCAANATCCCATTGCTGCATCTATAGCTTTTGCATGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGA
AGAGGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19519.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis