Browse Element(s) Details


Os.19539.1.S1_at

Description gb:AK058932.1
DB_XREF= gi:32968950
TID=Os.19539.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D09, full insert sequence.
FL= gb:AK058932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g475609/11DNA-binding protein SMUBP-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47530NANA2+29033065..29033391hypothetical protein
LOC_Os02g47540OsAffx.22947.1.S1_x_at11/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.3.S1_x_at5/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.2.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47540OsAffx.22947.5.S1_x_at3/112+29036887..29043250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g47550NANA2+29046402..29046770hypothetical protein
LOC_Os02g47560Os.19539.1.S1_at9/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47560OsAffx.24767.1.S1_x_at3/112+29053525..29056601DNA-binding protein SMUBP-2, putative, expressed
LOC_Os02g47570Os.18777.1.S1_at10/112+29063588..29066254PAP2 superfamily protein, expressed
LOC_Os02g47580Os.7396.2.S1_a_at11/112+29066585..29070609expressed protein
LOC_Os02g47590Os.16681.1.S1_at10/112+29072491..29075389Ornithine carbamoyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47600Os.8567.1.S1_at10/112+29075952..29080833Soluble inorganic pyrophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004003molecular_functionATP-dependent DNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19539.1.S1_at--324--2111Chr02:29054074..29054098 (25 bp)
ACATGTAGTGCCTGGTTCTTTGGAT
LOC_Os02g47560
Os.19539.1.S1_at--53--7751Chr02:29054047..29054071 (25 bp)
GGTGTCTGGCCTTGGCTTCAGTCAA
LOC_Os02g47560
Os.19539.1.S1_at--1013--4491Chr02:29054014..29054038 (25 bp)
GCCGTCCATCAGTTAGCACACACAA
LOC_Os02g47560
Os.19539.1.S1_at--891--151NONE
ATTATCATTCGGTGGTCATGCCCAT
NONE
Os.19539.1.S1_at--976--5691Chr02:29053891..29053915 (25 bp)
GACTGAAGAACCATAGGGTCCCCGT
LOC_Os02g47560
Os.19539.1.S1_at--1080--1031Chr02:29053877..29053901 (25 bp)
AGGGTCCCCGTTCGATATTTATCTG
LOC_Os02g47560
Os.19539.1.S1_at--678--7871Chr02:29053748..29053772 (25 bp)
GGTTAGTCGGTCTTGCATTTTGGAT
LOC_Os02g47560
Os.19539.1.S1_at--344--7031Chr02:29053719..29053743 (25 bp)
GTACATGATCGTTTCAGCAGCAGGA
LOC_Os02g47560
Os.19539.1.S1_at--13--171Chr02:29053691..29053715 (25 bp)
ATTTTAGTGTCCTGGGCATCTCGAA
LOC_Os02g47560
Os.19539.1.S1_at--840--5431NONE
GAACCTACTGCATTGCCGGCTATGA
NONE
Os.19539.1.S1_at--641--3811Chr02:29053642..29053666 (25 bp)
CTCCTGCTGCCTGTAATTTCATATA
LOC_Os02g47560
Target Sequence 
ACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAGCACA
CACAACAAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACT
CTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACNAACAG
TGATTCATGGATAGACATGGAAGAGCTTGCGATGACGCATGATGCATGGCCANGTTGATCTGTTGTTGAGAGTAACTGGA
GGCANGGAGGTTAGTCGGTCTTGCATTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGG
GCATCTCGAACCTACTGCATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis