Browse Element(s) Details


Os.19558.1.S1_at

Description gb:AK101918.1
DB_XREF= gi:32987127
TID=Os.19558.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071J02, full insert sequence.
FL= gb:AK101918.1 gb:AK111940.1 gb:AK102966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1155010/11Serine/threonine protein phosphatase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g11580NANA5+6539084..6539365expressed protein
LOC_Os05g11590OsAffx.26837.1.S1_at11/115+6540993..6541256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006913biological_processnucleocytoplasmic transport
GO:0010017biological_processred or far red light signaling pathway
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19558.1.S1_at--98--10031Chr05:6515482..6515506 (25 bp)
TAGAGGTCCAAGCAAACGCGGTGTT
LOC_Os05g11550
Os.19558.1.S1_at--758--8811Chr05:6515503..6515527 (25 bp)
TGTTGGTCTTTCGTTTGGTGCAGAT
LOC_Os05g11550
Os.19558.1.S1_at--979--8091Chr05:6515700..6515723 (24 bp)
GGACCTTGTTGTTCGATCCCATGAA
LOC_Os05g11550
Os.19558.1.S1_at--193--10431Chr05:6515764..6515788 (25 bp)
TTATAACGGTGTTCTCTGCTCCCAA
LOC_Os05g11550
Os.19558.1.S1_at--1049--3811NONE
CTGCTCCCAATTATTGCGACCAGAT
NONE
Os.19558.1.S1_at--528--331Chr05:6515972..6515996 (25 bp)
ATACATTCGGTTCACAGCTCCAGAA
LOC_Os05g11550
Os.19558.1.S1_at--202--2671Chr05:6516402..6516426 (25 bp)
AAGCCGATGGCCTACGCGAACAACT
LOC_Os05g11550
Os.19558.1.S1_at--820--2512Chr05:6516423..6516447 (25 bp)
AACTTCCTCAGGATGTTCCAGTAAC
LOC_Os05g11550
Os.19558.1.S1_at--665--2511Chr05:6516448..6516472 (25 bp)
AACATATATCCATATCCGCCTTCTT
LOC_Os05g11550
Os.19558.1.S1_at--1055--171Chr05:6516569..6516593 (25 bp)
ATTTTTCTATATACTGCCATGGCAC
LOC_Os05g11550
Os.19558.1.S1_at--963--9191Chr05:6516583..6516607 (25 bp)
TGCCATGGCACTCTGTTACAATTTT
LOC_Os05g11550
Target Sequence 
TAGAGGTCCAAGCAAACGCGGTGTTGGTCTTTCGTTTGGTGCAGATGTGACTAAGAAATTTCTACAAGAAAATAATCTGG
ACCTTGTTGTTCGATCCCATGAAGTGAAAGATGAAGGCTATGAAATTGAACATGATGGAAAGCTTATAACGGTGTTCTCT
GCTCCCAATTATTGCGACCAGATGGGTAACAAGGGTGCATACATTCGGTTCACAGCTCCAGAACTAAAACCAAATATTTC
CTCNTTTCTCAGCGGTGCCACACCCTGACGTCAAGCCGATGGCCTACGCGAACAACTTCCTCAGGATGTTCCAGTAACAA
CATATATCCATATCCGCCTTCTTTCGCCATATTTTTTTTTTGTGACGAGGCTGAAGCCTAAAAAGCTTGCTAGCATACGA
TGTTTGTACAACAGATCTGGTGGTGTAAGCAGGAATGCAATTTTTCTATATACTGCCATGGCACTCTGTTACAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis