Browse Element(s) Details


Os.19569.1.S1_x_at

Description gb:AK060179.1
DB_XREF= gi:32970197
TID=Os.19569.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-A08, full insert sequence.
FL= gb:AK060179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0199011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01950Os.50420.1.S1_s_at11/115+520220..521013expressed protein
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19569.1.S1_x_at--450--6651Chr05:542521..542545 (25 bp)
GTTGACGATTTCAAGCTTCCTGCAC
LOC_Os05g01990
Os.19569.1.S1_x_at--926--4911Chr05:542535..542559 (25 bp)
GCTTCCTGCACAGCTTGTTCAAAGA
LOC_Os05g01990
Os.19569.1.S1_x_at--507--6831Chr05:542646..542670 (25 bp)
GTTTCATGTGGTTCAAGGCTCGCGA
LOC_Os05g01990
Os.19569.1.S1_x_at--923--9331Chr05:542665..542689 (25 bp)
TCGCGATTCTTCTTACCATTCTTAA
LOC_Os05g01990
Os.19569.1.S1_x_at--77--1271Chr05:542897..542921 (25 bp)
AGATTTCCACCATACAGTACTCAGC
LOC_Os05g01990
Os.19569.1.S1_x_at--448--4271Chr05:542937..542961 (25 bp)
CCTGGCCTGCAACTGGATACGGATA
LOC_Os05g01990
Os.19569.1.S1_x_at--166--131Chr05:542976..543000 (25 bp)
ATTAGCTGCAAAGTGTTCCGTTTAC
LOC_Os05g01990
Os.19569.1.S1_x_at--630--6751Chr05:543162..543186 (25 bp)
GTTCACAGGTACCTGAAGCATCTCC
LOC_Os05g01990
Os.19569.1.S1_x_at--521--5391Chr05:543176..543200 (25 bp)
GAAGCATCTCCCTGTCTAAAACATT
LOC_Os05g01990
Os.19569.1.S1_x_at--581--7871Chr05:543209..543233 (25 bp)
GGTTTCTGATTTATTGTTTCCAACA
LOC_Os05g01990
Os.19569.1.S1_x_at--86--10771Chr05:543280..543304 (25 bp)
TTGTTGCAGACTAAAGCACTTTACT
LOC_Os05g01990
Target Sequence 
GTTGACGATTTCAAGCTTCCTGCACAGCTTGTTCAAAGATATGTTAAAGTTTCATGTGGTTCAAGGCTCGCGATTCTTCT
TACCATTCTTAAATCTCTGTTTGAAAGACAACTGTCTCATAAGGTTGTTGTTTTCCTGTCAACATGTGACTCTGTAGATT
TCCACCATACAGTACTCAGCCAGCTTGAGTGGAGCCCTGGCCTGCAACTGGATACGGATAAGAAGCAAAAGTTTATTAGC
TGCAAAGTGTTCCGTTTACATGGGAATATGGACCAGGATGATCGCAAGAAATCATTTCTGGGATTCAGTTCTGAGAAATC
TGCAATTCTTGTATCTACTGATGTTGCTGCTAGGGGCTTGGACTTTCCAAAAGTTAAATGTATCATACAGTATGATTCAC
CTGGGGAGGCTTCTGAATATGTTCACAGGTACCTGAAGCATCTCCCTGTCTAAAACATTTATTTGTAGGTTTCTGATTTA
TTGTTTCCAACATAGTTATAATTGTATTATTTGATTGTATACGAACAGACAAAATGTATTGTTGCAGACTAAAGCACTTT
ACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis