Browse Element(s) Details


Os.19577.1.S1_at

Description gb:AK066096.1
DB_XREF= gi:32976114
TID=Os.19577.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056N22, full insert sequence.
FL= gb:AK066096.1 gb:AK072117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4809010/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48100NANA11+28448396..28448845hypothetical protein
LOC_Os11g48110Os.27728.1.S1_at2/1111+28454487..28456741Phenylalanine ammonia-lyase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0003678molecular_functionDNA helicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19577.1.S1_at--22--5991NONE
GAGAAAGTTCATATGCGCTGGAGCA
NONE
Os.19577.1.S1_at--177--7871Chr11:28434952..28434976 (25 bp)
GGTTTGTGATTCACCACAGCCTTAG
LOC_Os11g48090
Os.19577.1.S1_at--542--6871Chr11:28434784..28434808 (25 bp)
GTATTCTGTATTATCGACCTGGTGA
LOC_Os11g48090
Os.19577.1.S1_at--702--8611Chr11:28434683..28434789 (25 bp)
TGGTGATGTTCCACGCCAAAGTTCA
LOC_Os11g48090
Os.19577.1.S1_at--757--4391Chr11:28434669..28434775 (25 bp)
GCCAAAGTTCAATGGTCTTCTATGA
LOC_Os11g48090
Os.19577.1.S1_at--856--9631Chr11:28434006..28434028 (23 bp)
TCAGTCTAAGAGGAGCTGTCGTCGT
LOC_Os11g48090
Os.19577.1.S1_at--218--4891Chr11:28433978..28434002 (25 bp)
GCTTTCTTCCGGCATTTTGGAGAGG
LOC_Os11g48090
Os.19577.1.S1_at--423--8211Chr11:28433862..28433886 (25 bp)
GGAATGTGTGACAACTGCACTTCTA
LOC_Os11g48090
Os.19577.1.S1_at--511--3851Chr11:28433848..28433872 (25 bp)
CTGCACTTCTAGTCTTGAGCTCAAG
LOC_Os11g48090
Os.19577.1.S1_at--943--4831Chr11:28433830..28433854 (25 bp)
GCTCAAGGAGATAGACGCTACCCGT
LOC_Os11g48090
Os.19577.1.S1_at--31--5811Chr11:28433817..28433841 (25 bp)
GACGCTACCCGTATGATGATTTTAC
LOC_Os11g48090
Target Sequence 
GAGAAAGTTCATATGCGCTGGAGCAAAAGCAAATTGCAGGTCATTGTTGGAACAGTGGCGTTTGGAATGGGAATCAACAA
GCCAGATGTCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGGAAAGTGGAAGGGCAGGGA
GAGATGGACTACCTTCAGAATGTATTCTGTATTATCGACCTGGTGATGTTCCACGCCAAAGTTCAATGGTCTTCTATGAA
AACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGTCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCG
GCATTTTGGAGAGGCTGCACAAGATTGCAATGGAATGTGTGACAACTGCACTTCTAGTCTTGAGCTCAAGGAGATAGACG
CTACCCGTATGATGATTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis