Browse Element(s) Details


Os.19626.1.S1_at

Description gb:AK105867.1
DB_XREF= gi:32991076
TID=Os.19626.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A08, full insert sequence.
FL= gb:AK105867.1 gb:AK068690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3960011/11outer envelope protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19626.1.S1_at--497--9211Chr02:23890723..23890747 (25 bp)
TCCAATGCTGTATCCTTAGGCTTCA
LOC_Os02g39600
Os.19626.1.S1_at--1045--2931Chr02:23890697..23890721 (25 bp)
AAGGCGGTTTGGTCCTTCTGATAAG
LOC_Os02g39600
Os.19626.1.S1_at--110--5891Chr02:23889853..23889876 (24 bp)
GAGCTATCGTTATGACTTTACCACT
LOC_Os02g39600
Os.19626.1.S1_at--250--5791Chr02:23889134..23889158 (25 bp)
GACGAAACTTCAGCTCATGCTTCAA
LOC_Os02g39600
Os.19626.1.S1_at--265--2831Chr02:23889111..23889135 (25 bp)
AAGTTCCTCAGGACAATTTCCGCAA
LOC_Os02g39600
Os.19626.1.S1_at--1105--3351Chr02:23889083..23889107 (25 bp)
CACCTTCCTGTTCCGTGTGAAGAAA
LOC_Os02g39600
Os.19626.1.S1_at--69--10831Chr02:23889000..23889024 (25 bp)
TTGGGTACTCGGGATTTGGCCAACA
LOC_Os02g39600
Os.19626.1.S1_at--383--1691Chr02:23888929..23888953 (25 bp)
AGCCTTTCCAATTCTCATCATGTAA
LOC_Os02g39600
Os.19626.1.S1_at--86--7071Chr02:23888908..23888932 (25 bp)
GTAATTCTGCCTGCTGTACATAACG
LOC_Os02g39600
Os.19626.1.S1_at--482--6711Chr02:23888877..23888901 (25 bp)
GTTCGTTCCGCACATAAGCAATTTG
LOC_Os02g39600
Os.19626.1.S1_at--159--7591Chr02:23888812..23888836 (25 bp)
GGGCTAACTTTTCCGGAGTGCTATC
LOC_Os02g39600
Target Sequence 
TCCAATGCTGTATCCTTAGGCTTCAAAAGGCGGTTTGGTCCTTCTGATAAGTTGAGCTATCGTTATGACTTTACCACTGA
TGACTGGAATGCTGTTTATAAGCGCACAGTTGGTAAAGATTTCAAAGTGAAAGCTGGTTATGATTCTGAGGTGCGAGTTG
GATGGGCTTCAGTTTGGGTGGGTCAAGAAGACGGCAAGGCAAAGACCGCACCAATGAAGACGAAACTTCAGCTCATGCTT
CAAGTTCCTCAGGACAATTTCCGCAATCCCACCTTCCTGTTCCGTGTGAAGAAAAGATGGGATCTGTAGCATATGCTACA
TTATATACTCCATTTGTATGGGGATACCAGTATTGGGTACTCGGGATTTGGCCAACATTTTGTTGTAAGCTGCGTAGGAT
GGCTTGAAAAAAAAAATCCATGAAGCCTTTCCAATTCTCATCATGTAATTCTGCCTGCTGTACATAACGGCCATNGTTCG
TTCCGCACATAAGCAATTTGATTTCCATGTAAGATTGTTCNACCCCTTTACTCGAAGTTCTGGGCTAACTTTTCCGGAGT
GCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis