Browse Element(s) Details


Os.19965.1.S1_at

Description gb:AK063516.1
DB_XREF= gi:32973534
TID=Os.19965.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H01, full insert sequence.
FL= gb:AK063516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g521409/11expressed protein
LOC_Os05g133001/11Helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009411biological_processresponse to UV
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19965.1.S1_at--2--7091Chr01:30324783..30324807 (25 bp)
GTCAATTCTTTAGTGTCATCTGCAG
LOC_Os01g52140
Os.19965.1.S1_at--221--7571Chr01:30324837..30324861 (25 bp)
GGGCCCTCTTTTACTTATGATGAAG
LOC_Os01g52140
Os.19965.1.S1_at--398--2351Chr05:7350647..7350947 (25 bp)
AAAGCTTTGCAGTTCAGTGGACAAC
LOC_Os05g13300
Os.19965.1.S1_at--993--8811Chr01:30325484..30325508 (25 bp)
TGATACCCCTTTCATTGGCAGGACT
LOC_Os01g52140
Os.19965.1.S1_at--791--5711Chr01:30325505..30325529 (25 bp)
GACTCTGCCTAGATTTGTGGTTCGA
LOC_Os01g52140
Os.19965.1.S1_at--756--671NONE
ATGACATGGCTGCTAGTATCGTCTA
NONE
Os.19965.1.S1_at--433--5951Chr01:30326537..30326561 (25 bp)
GAGCAACACATAATCCACCACATTT
LOC_Os01g52140
Os.19965.1.S1_at--931--8971Chr01:30326586..30326610 (25 bp)
TGAACTTGTGCCCTCATTGGTATCT
LOC_Os01g52140
Os.19965.1.S1_at--398--2691Chr01:30326727..30326751 (25 bp)
AAGCTAGCTTGTATTTGGTGAACCA
LOC_Os01g52140
Os.19965.1.S1_at--1044--271Chr01:30326754..30326778 (25 bp)
ATAGTAATTGCGTCAGTGTCTGCCA
LOC_Os01g52140
Os.19965.1.S1_at--900--8671Chr01:30326770..30326794 (25 bp)
TGTCTGCCAAGGGTACTGTATTTCT
LOC_Os01g52140
Target Sequence 
GTCAATTCTTTAGTGTCATCTGCAGTGAAGACTGAGCTAAAAGAGGAGGTGGAGGGGCCCTCTTTTACTTATGATGAAGG
TCATGTTCATGGTGTTACAGGAGCAAGGGGCCTTACACTCAGTGACAAAGCTTTGCAGTTCAGTGGACAACATCCTAGGG
GACCTGATACCCCTTTCATTGGCAGGACTCTGCCTAGATTTGTGGTTCGACAACTAGTCGGTGGCAGTTCTGAAATGAAT
CAAATGACATGGCTGCTAGTATCGTCTAGTTCTACTGGGGCTCCGGGAGCAACACATAATCCACCACATTTTGGCAGCTA
TTACCCCCAACCTTCTGAACTTGTGCCCTCATTGGTATCTCCAAGGTAAATATAAAGTTTTTTGTACATTACATAATTGG
ATTGCAGATTTTATAATTCAACCCTGATACGTATATATGTTAGATTGTTAGGGTACGATCATGTATTCATATCAGAAAGC
TAGCTTGTATTTGGTGAACCAGAATAGTAATTGCGTCAGTGTCTGCCAAGGGTACTGTATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis