Browse Element(s) Details


Os.20018.2.S1_x_at

Description gb:AK071719.1
DB_XREF= gi:32981742
TID=Os.20018.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108H11, full insert sequence.
FL= gb:AK071719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g343502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20018.2.S1_x_at--1092--691Chr08:21425066..21425090 (25 bp)
ATGAGGCCTTCGACTTCACAGGAGA
LOC_Os08g34350
Os.20018.2.S1_x_at--725--10571Chr08:21425224..21425248 (25 bp)
TTCTCCTTATAGCTAGACCCTTGTG
LOC_Os08g34350
Os.20018.2.S1_x_at--287--3731Chr08:21425253..21425277 (25 bp)
CTACTCTACCATCTGAACTTCTGAA
NONE
Os.20018.2.S1_x_at--449--8871Chr08:21425306..21425330 (25 bp)
TGAGGCGGCCATCTATCAGGAACAT
NONE
Os.20018.2.S1_x_at--98--5491Chr08:21425325..21425349 (25 bp)
GAACATCTCTTCCATGAATACCCAA
NONE
Os.20018.2.S1_x_at--232--7051Chr08:21425383..21425407 (25 bp)
GTAAAACTGCAAACTCCCATGGTGG
NONE
Os.20018.2.S1_x_at--783--9311Chr08:21425397..21425421 (25 bp)
TCCCATGGTGGCGTTCTTTGAGAAG
NONE
Os.20018.2.S1_x_at--322--5971Chr08:21425416..21425440 (25 bp)
GAGAAGTCTCATACACACACTCATC
NONE
Os.20018.2.S1_x_at--575--8971Chr08:21425515..21425539 (25 bp)
TGAAGTTTTCGCGTTCGGGAGTCCA
NONE
Os.20018.2.S1_x_at--256--6951Chr08:21425613..21425637 (25 bp)
GTAGCAACGTTCTTTTCACAGTGGC
NONE
Os.20018.2.S1_x_at--371--4391Chr08:21425642..21425666 (25 bp)
GCCAATGCAGCCGTTATGTTACTTG
NONE
Target Sequence 
ATGAGGCCTTCGACTTCACAGGAGACCCCTCGGAATGACCAATCCTTGGAATCTGTCTTGGAGGCGGCTCTGTCCTTCTC
CTTATAGCTAGACCCTTGTGGCCTCTACTCTACCATCTGAACTTCTGAAGCATATATTCAGAGGCCACCTCCAGTTTTGA
GGCGGCCATCTATCAGGAACATCTCTTCCATGAATACCCAACAAGGGGAAATGCATAGAGTTTTTATATGCAGTGTAAAA
CTGCAAACTCCCATGGTGGCGTTCTTTGAGAAGTCTCATACACACACTCATCTATCAAGGCCTCCTTCGAGCGGAGGATT
TTCGAAGAAATTCTGCAGGAATTGAACTAATTCCTGTAAAATTCTGTGAAGTTTTCGCGTTCGGGAGTCCAAATAGAAAG
AAATCTAGGTGTTGGGTCTGTGGGCTGTGGCCTGACGCCCCACTTCGGCAACCAGGCATCCGTTGTAGCAACGTTCTTTT
CACAGTGGCAGCGGCCAATGCAGCCGTTATGTTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20018.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis