Browse Element(s) Details


Os.20100.1.S1_s_at

Description gb:AK070638.1
DB_XREF= gi:32980662
TID=Os.20100.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.20100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056K03, full insert sequence.
FL= gb:AK070638.1 gb:AK070233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1928011/11Argininosuccinate lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19280Os.22334.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19280Os.20100.1.S1_s_at11/113+10822070..10826490Argininosuccinate lyase, putative, expressed
LOC_Os03g19290Os.11491.1.S1_at11/113+10827369..10828820mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g19300Os.10098.1.S1_at11/113+10829649..10832773peptide chain release factor 2 family protein, expressed
LOC_Os03g19310Os.49103.1.S1_at11/113+10832847..10834573Glycosyltransferase 5, putative, expressed
LOC_Os03g19320OsAffx.3274.1.S1_at11/113+10839919..10841386hypothetical protein
LOC_Os03g19330OsAffx.12935.1.S1_at11/113+10843526..10844872Glycosyltransferase 3, putative
LOC_Os03g19340OsAffx.25142.1.S1_at11/113+10845671..10861878expressed protein
LOC_Os03g19340OsAffx.11208.1.S1_at1/113+10845671..10861878expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004056molecular_functionargininosuccinate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20100.1.S1_s_at--592--2911Chr03:10825632..10825656 (25 bp)
AAGGAACCCTTGTTTGACAGCGTGA
LOC_Os03g19280
Os.20100.1.S1_s_at--680--3611Chr03:10825674..10825698 (25 bp)
CTTGAAGTATGTACCGAGTTTGCTC
LOC_Os03g19280
Os.20100.1.S1_s_at--152--4831Chr03:10825695..10825719 (25 bp)
GCTCAAAATATCTCCTTCAACTCAA
LOC_Os03g19280
Os.20100.1.S1_s_at--793--5231Chr03:10825723..10825747 (25 bp)
GAATACAAAGTTCGCTGCCTGCTGG
LOC_Os03g19280
Os.20100.1.S1_s_at--275--3831Chr03:10825737..10825761 (25 bp)
CTGCCTGCTGGCTATTTGGATGCAA
LOC_Os03g19280
Os.20100.1.S1_s_at--1059--5311Chr03:10826049..10826071 (23 bp)
GAAGGGCGTGCCGTTCAGAACCTCG
LOC_Os03g19280
Os.20100.1.S1_s_at--1112--3871Chr03:10826091..10826115 (25 bp)
CTGTAGCTCTATGCGTCTCGAAGAA
LOC_Os03g19280
Os.20100.1.S1_s_at--579--5371Chr03:10826110..10826134 (25 bp)
GAAGAACTGTCAGCTCGCCGAACTT
LOC_Os03g19280
Os.20100.1.S1_s_at--869--9331Chr03:10826124..10826148 (25 bp)
TCGCCGAACTTGGACTAGACGACCT
LOC_Os03g19280
Os.20100.1.S1_s_at--771--10491Chr03:10826157..10826181 (25 bp)
TTCACCCCGTTTTTGAGGGCGATGT
LOC_Os03g19280
Os.20100.1.S1_s_at--1004--411Chr03:10826190..10826214 (25 bp)
ATCTGGGAGTGGAGAACGCCGTAAA
LOC_Os03g19280
Target Sequence 
AAGGAACCCTTGTTTGACAGCGTGAAGGCTGTATTAGGAATGCTTGAAGTATGTACCGAGTTTGCTCAAAATATCTCCTT
CAACTCAAAAAGAATACAAAGTTCGCTGCCTGCTGGCTATTTGGATGCAACAACACTAGCAGATTATCTTGTGAAGAAGG
GCGTGCCGTTCAGAACCTCGCACGAGATAGTTGGAAGGTCTGTAGCTCTATGCGTCTCGAAGAACTGTCAGCTCGCCGAA
CTTGGACTAGACGACCTGANATCTGTTCACCCCGTTTTTGAGGGCGATGTGTACGAGTATCTGGGAGTGGAGAACGCCGT
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20100.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis