Browse Element(s) Details


Os.20350.1.S1_at

Description gb:AK120792.1
DB_XREF= gi:37990415
TID=Os.20350.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.20350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056A20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011O11, full insert sequence.
FL= gb:AK120792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0355011/11expressed protein
LOC_Os06g121701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03500OsAffx.6567.2.S1_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03500OsAffx.6567.1.S1_x_at11/1110+1498961..1499455hypothetical protein
LOC_Os10g03510OsAffx.18106.1.S1_at11/1110+1500565..1500954hypothetical protein
LOC_Os10g03520OsAffx.18107.1.S1_at11/1110+1507807..1508585expressed protein
LOC_Os10g03530OsAffx.20776.1.S1_at11/1110+1509660..1510442CAF1 family ribonuclease containing protein
LOC_Os10g03540Os.3964.1.S1_at10/1110+1514711..1516444NHP2-like protein 1, putative, expressed
LOC_Os10g03550Os.20350.1.S1_at11/1110+1516948..1520338expressed protein
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20350.1.S1_at--146--751Chr10:1519755..1519779 (25 bp)
ATGTCGAACCACCTGTTGTCAAGCA
LOC_Os10g03550
Os.20350.1.S1_at--226--2771Chr10:1519809..1519833 (25 bp)
AAGAGCCTTGTTCTGTTGGAAGTGT
LOC_Os10g03550
Os.20350.1.S1_at--546--10871Chr10:1519824..1519848 (25 bp)
TTGGAAGTGTCTTGGCAGCAGCATC
LOC_Os10g03550
Os.20350.1.S1_at--592--1511Chr10:1519840..1519864 (25 bp)
AGCAGCATCCCCAGTAACAGAGGCA
LOC_Os10g03550
Os.20350.1.S1_at--987--2471Chr10:1519866..1519890 (25 bp)
AACAGTCCAGCTCTGACCGGAAAAG
LOC_Os10g03550
Os.20350.1.S1_at--710--6431Chr10:1520043..1520067 (25 bp)
GATCAGCAAGGTGTCAGCCTACCGA
LOC_Os10g03550
Os.20350.1.S1_at--911--1651Chr10:1520085..1520109 (25 bp)
AGCCCAGAGCAGTCCATTTGCCTGA
LOC_Os10g03550
Os.20350.1.S1_at--988--5831Chr10:1520108..1520132 (25 bp)
GACCTTCTTATGTATCAGCTGCCGT
LOC_Os10g03550
Os.20350.1.S1_at--832--1592Chr10:1520124..1520148 (25 bp)
AGCTGCCGTTTGTTGTGCCTTTTTA
LOC_Os10g03550
Os.20350.1.S1_at--244--2531Chr10:1520233..1520257 (25 bp)
AACTGGGAGCCGTGTTTCCTTGCTT
LOC_Os10g03550
Os.20350.1.S1_at--812--4311Chr10:1520250..1520274 (25 bp)
CCTTGCTTCAGTTTTCCAGCTTATA
LOC_Os10g03550
Target Sequence 
ATGTCGAACCACCTGTTGTCAAGCAGCAGCAACAGATTGTGCCCGAAGCACAAGAAGAGCCTTGTTCTGTTGGAAGTGTC
TTGGCAGCAGCATCCCCAGTAACAGAGGCACAACAGTCCAGCTCTGACCGGAAAAGCCGCAAGGCTGAGAAGAAAGGGAG
GAAGCTTGCAGATTTGTTTGTGAACTGGAAACCATCACCCACACAGATGGAAGATACAGATGTTGGTGACCAGGACTGGC
TCTTCAGCTGCCGGGCGACCCCTAAAAATAACTGCAGGNCCTTCGATGGATCAGCAAGGTGTCAGCCTACCGAGCAGCTC
TTCTCGCTGCAGCCCAGAGCAGTCCATTTGCCTGACCTTCTTATGTATCAGCTGCCGTTTGTTGTGCCTTTTTAGGTTAT
AAGTTTAGATTTAGATGAGTGACGGTTGTAAGTAGCTTAATGGGCAGTGGACAACAAGAAGCTGTGAAGCTTTGTGGGAA
CTGGGAGCCGTGTTTCCTTGCTTCAGTTTTCCAGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis