Browse Element(s) Details


Os.20414.1.S1_at

Description gb:AK120239.1
DB_XREF= gi:37989862
TID=Os.20414.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044B08, full insert sequence.
FL= gb:AK120239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5651011/11ABC1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20414.1.S1_at--191--5811Chr04:33479208..33479232 (25 bp)
GACCCCTTTTTTGCGCAGTTGATGA
LOC_Os04g56510
Os.20414.1.S1_at--1155--11Chr04:33479180..33479204 (25 bp)
ATTGGAGGATGCTCCTTCGCACCAG
LOC_Os04g56510
Os.20414.1.S1_at--679--10631Chr04:33479165..33479189 (25 bp)
TTCGCACCAGTACATCTAGTTTCTT
LOC_Os04g56510
Os.20414.1.S1_at--529--71Chr04:33479122..33479146 (25 bp)
ATTCCACAGTTTTGTACCCATCTTG
LOC_Os04g56510
Os.20414.1.S1_at--1005--7291Chr04:33479093..33479117 (25 bp)
GTGCTGCTTAAACGGCCATGTCTAA
LOC_Os04g56510
Os.20414.1.S1_at--188--1471Chr04:33479036..33479060 (25 bp)
AGAAGTGTGCTCTGGACCCACAATA
LOC_Os04g56510
Os.20414.1.S1_at--1005--7931Chr04:33479006..33479030 (25 bp)
GGATTATCTGCTTATGCACTCTGCA
LOC_Os04g56510
Os.20414.1.S1_at--373--2311Chr04:33478977..33479001 (25 bp)
AAAGGATGCGTTCTCCTCCATGAAA
LOC_Os04g56510
Os.20414.1.S1_at--868--4431Chr04:33478917..33478941 (25 bp)
GCCTTCGCTGATGATCTTTTTGTAA
LOC_Os04g56510
Os.20414.1.S1_at--345--10691Chr04:33478702..33478726 (25 bp)
TTCCAGGTTGCTTCTGCGTTTCAAA
LOC_Os04g56510
Os.20414.1.S1_at--1120--4631Chr04:33478687..33478711 (25 bp)
GCGTTTCAAATTCCTGTCTTATGTT
LOC_Os04g56510
Target Sequence 
GACCCCTTTTTTGCGCAGTTGATGAGATATTGGAGGATGCTCCTTCGCACCAGTACATCTAGTTTCTTTTTCCTGTTTAC
TTTTAAATTCCACAGTTTTGTACCCATCTTGGCCAGTGCTGCTTAAACGGCCATGTCTAATTAATAATTGCAGCATTTTT
TCAAGCTACCAGAGAAGTGTGCTCTGGACCCACAATACCCTGGGATTATCTGCTTATGCACTCTGCAGGCCAAAGGATGC
GTTCTCCTCCATGAAATTTCTGTTAATAGCTCTTAGAAGATGTAGCAAAAGGCCTTCGCTGATGATCTTTTTGTAACTCG
AGAGGTGTCAGTGAACAAGNGGTTTTTTATTGTATACACAGATACAGCTAACTGTTCCNAAAAAAAACCTACGTCATGCC
TGACAAAATTCATGGATTGCCCATANAANNNNGTGCTTTCGCATTTGTTTGGAATGCAGAAGACTTAACTGTACAAATGT
TTGCTGGTAAGCAGGCATAGAGTTTATTTCCAGGTTGCTTCTGCGTTTCAAATTCCTGTCTTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis