Browse Element(s) Details


Os.20482.1.S1_at

Description gb:AK106276.1
DB_XREF= gi:32991485
TID=Os.20482.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H04, full insert sequence.
FL= gb:AK106276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0255011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02540Os.2361.1.S1_at11/113+913389..917540COP9 signalosome complex subunit 1, putative, expressed
LOC_Os03g02550Os.20482.1.S1_at11/113+921081..923409F-box family protein, putative, expressed
LOC_Os03g02560Os.16712.1.S1_at11/113+924377..927368F-box family protein, putative, expressed
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20482.1.S1_at--47--951Chr03:922857..922881 (25 bp)
AGGAAGCTGGATTCTTTACCATGTT
LOC_Os03g02550
Os.20482.1.S1_at--910--3511Chr03:922876..922900 (25 bp)
CATGTTGGTGATTTCGTCGCATCGA
LOC_Os03g02550
Os.20482.1.S1_at--369--5711Chr03:922902..922926 (25 bp)
GACTGAACAACCCATCAAGCTCAAG
LOC_Os03g02550
Os.20482.1.S1_at--768--9711Chr03:922922..922946 (25 bp)
TCAAGTTCTCCCTGGCACAGATCGA
LOC_Os03g02550
Os.20482.1.S1_at--987--2111Chr03:922938..922962 (25 bp)
ACAGATCGACTGCACCCATACGAAA
LOC_Os03g02550
Os.20482.1.S1_at--522--9951Chr03:922956..922980 (25 bp)
TACGAAAGGTGGTCTCTGCGTCGAT
LOC_Os03g02550
Os.20482.1.S1_at--752--3771Chr03:922969..922993 (25 bp)
CTCTGCGTCGATTCAGTGCTGATTT
LOC_Os03g02550
Os.20482.1.S1_at--237--711Chr03:923190..923214 (25 bp)
ATGAGTGAGCTTTGTTGCTCTTTCT
LOC_Os03g02550
Os.20482.1.S1_at--708--7611Chr03:923239..923263 (25 bp)
GGGAATGTCTTGAGCTCACTTACCT
LOC_Os03g02550
Os.20482.1.S1_at--811--10451Chr03:923258..923282 (25 bp)
TTACCTTCAGTCACGGCTCCAAAGT
LOC_Os03g02550
Os.20482.1.S1_at--1024--1911Chr03:923270..923294 (25 bp)
ACGGCTCCAAAGTGCTTGTACTGAT
LOC_Os03g02550
Target Sequence 
AGGAAGCTGGATTCTTTACCATGTTGGTGATTTCGTCGCATCGACGACTGAACAACCCATCAAGCTCAAGTTCTCCCTGG
CACAGATCGACTGCACCCATACGAAAGGTGGTCTCTGCGTCGATTCAGTGCTGATTTATCCCNAAGGATTTCAGCAAGAG
AAGGTGATTAGTTCTCAGAAGTGAAAGTGAGTTTGTGCACTCGACCNAAGTTGCTCTACATTAGAGGATTAGAGCTGTAG
ATAGTGTAGTGTAGANAATAGCCTACCGTTTTTAACTTGGGCTTATTGTATGCNATGGAAGAATGGAGTGAANTTTTTTT
GTGCGGCGGCGTGATGAGTGAGCTTTGTTGCTCTTTCTCACAGNTGGTGGCCATGGTGCTGAGGGGAATGTCTTGAGCTC
ACTTACCTTCAGTCACGGCTCCAAAGTGCTTGTACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis