Browse Element(s) Details


Os.20498.1.S1_at

Description gb:AK061854.1
DB_XREF= gi:32971872
TID=Os.20498.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F11, full insert sequence.
FL= gb:AK099002.1 gb:AK061854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2023010/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20210Os.50289.1.S1_at11/114+11239821..11246802expressed protein
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20498.1.S1_at--13--5871NONE
GAGCCAGTCGTTCAGCTATACACTA
NONE
Os.20498.1.S1_at--70--2791Chr04:11265402..11265425 (24 bp)
AAGATTGGTTGAACCCAGGGCTACT
LOC_Os04g20230
Os.20498.1.S1_at--1150--5431Chr04:11265392..11265416 (25 bp)
GAACCCAGGGCTACTTGCTTGAAAT
LOC_Os04g20230
Os.20498.1.S1_at--939--6511Chr04:11265354..11265378 (25 bp)
GATATTTTTATACTTGTTGGTACCA
LOC_Os04g20230
Os.20498.1.S1_at--746--6971Chr04:11265335..11265359 (25 bp)
GTACCAATATGTTGAGGCTCGTCTC
LOC_Os04g20230
Os.20498.1.S1_at--569--911Chr04:11265321..11265345 (25 bp)
AGGCTCGTCTCACCAGATTATTGCG
LOC_Os04g20230
Os.20498.1.S1_at--790--1251Chr04:11265307..11265331 (25 bp)
AGATTATTGCGGTTCTCTCTATAGC
LOC_Os04g20230
Os.20498.1.S1_at--882--4671Chr04:11265299..11265323 (25 bp)
GCGGTTCTCTCTATAGCTAGACGAG
LOC_Os04g20230
Os.20498.1.S1_at--274--4851Chr04:11265284..11265308 (25 bp)
GCTAGACGAGTTATTTGACAGGGTT
LOC_Os04g20230
Os.20498.1.S1_at--787--5611Chr04:11265268..11265292 (25 bp)
GACAGGGTTTGTACTTAAATATGGA
LOC_Os04g20230
Os.20498.1.S1_at--964--3831Chr04:11265198..11265222 (25 bp)
CTGCATTAAGATTACTGGCGTTCAT
LOC_Os04g20230
Target Sequence 
GAGCCAGTCGTTCAGCTATACACTAGGGATTCATCAAAAAGCTGGCGTCAGGCNGNATCAGATGGAAGTAGTCAGCTGAC
TTTAAAAGAACCATCAACCAATATGGTCTTAGCCGATCATGTTACAACGAAGAAATGGCAGCAAGTTGTTGATTTCGATG
ACCACCTCGATGANATTAGCAAAGATTGGTTGAACCCAGGGCTACTTGCTTGAAATAATTATGTGCTTTGATATTTTTAT
ACTTGTTGGTACCAATATGTTGAGGCTCGTCTCACCAGATTATTGCGGTTCTCTCTATAGCTAGACGAGTTATTTGACAG
GGTTTGTACTTAAATATGGACAAGTAATTTTTGTAACAAACTGTAGCATGTGAAAATGCTTAGATCTGCATTAAGATTAC
TGGCGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis